barSeed - Barley Seed Development Database

Probe CUST_17578_PI390587928

Source Contig U35_20574

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17578_PI390587928	Hv_44K_v2	GATGAACTCTTGTTCTGATTACAGTTAACACGAAAGGATCAATATTTGCATAGGCAACAA	421	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80384.4	1667	2e-24	1335 - 1394	100	60 / 60	plus	ABC14799
JLOC1	JLOC1_53519.1	1669	8e-25	1366 - 1425	100	60 / 60	plus
Harvest35	U35_20574	496	3e-25	422 - 481	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_20574 496 Hv_44K_v2
GCATCTGCAGCGGCAAGTTCGGGCCCGACCACCCGTACATCAACCCGGCGACGGCCCCGG
AGGAGTGGAGGCGGCTCGGGAGCGGCCGCGTGCTGGTCACCACGGCGGAGCATTGCTGGT
TCGTGGAGCGGGCGCGCGCGTACGCGGAGGGGATCAAGGCGTGCGGGTGGGACGGCGAGC
TCCAGTTCCACGAGACCAAGGGCGAGGCGCATGTCTACTTCCTGCCCAAGTACGACTCCG
ACACCGCCGTCGAGGAGCTCGCCATGGTGGCGGATTTCGTCAGGCGCTGTTGAGGATCTG
CTTGCTTTCATTCAGCAATAAAGGAGCACATGATTTGTGATGTATTTCGTGTGTTTTCTG
CTGTGAATTTGTGGAGTTCATACGAAAGGATCAATATTTGCATTGTTGAGCAAGACTTGT
TGATGAACTCTTGTTCTGATTACAGTTAACACGAAAGGATCAATATTTGCATAGGCAACA
AAAAAAAAAAAAAAAA

Homology of Contig U35_20574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g32330.1	323	2e-53
Arabidopsis v10	None