barSeed - Barley Seed Development Database

Probe CUST_17575_PI390587928

Source Contig U35_20577

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17575_PI390587928	Hv_44K_v2	TAGTTTTTCTGGCGCCATCCCACAAAATATATCAAATATGACATACCTGAACCTCCTCAA	618	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19405.2	2117	2e-24	1468 - 1527	100	60 / 60	minus	ABC10249
MLOC	MLOC_19405.1	2745	2e-24	1481 - 1540	100	60 / 60	minus	ABC10249
JLOC1	JLOC1_13456.2	3119	8e-25	1210 - 1269	100	60 / 60	plus
JLOC1	JLOC1_13456.1	2459	8e-25	550 - 609	100	60 / 60	plus
Harvest21	ABC12849	731	3e-25	619 - 678	100	60 / 60	plus
Harvest35	U35_20577	731	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_20577 731 Hv_44K_v2
CCCCCGGCTGCAGNAATTCGCACGAGGCTCCTCTCCTCTCCGGTCCTCCCTCCCTCCTCC
TCTTCCTCCCCCTACCCACAGCTCTTCTCCCCCACCTCCTGCCCCTACTCCCTCTCCCTG
GGTCCTCCCGGTTCCCACCTATGCGAGGACGGCGAGCTTCAGGTGAAGCTTGAACCTGCA
AGTGGTGTTGTCACGGAGGAGAGGTGAAGTTTGGTGCAAGTGCTCAATGGCAAATCATTA
TGCTCCTCTGAGGGTTATTCTTATACTGTTGTTGGTCTTCACTTGTTTTGCCTCTGAAGC
TGATATCCAATGCTTGAAATCTGTTCAGCAGTCAGTGAATGACCCCAACGGTGTACTCAA
ATCCTCATGGAATTTTGAGAACGTTACTGTTGGTTTCATATGCCGATTTACCGGTGTGGA
ATGTTGGCACCCGGATGAGGACCGGGTTCTTTCTTTGCGCCTAGGTAACCTTGGTCTCCA
GGGTCCATTTCCTCGTGGTCTTCAGAATTGTAGCAGTATGACTGGGCTGGATCTGTCAAA
CAACAACTTTTCAGGACTTATCCCTCAAGACATCTCCCGGGAAATACCATACTTAACATC
ATTGGACCTCTCCTACAATAGTTTTTCTGGCGCCATCCCACAAAATATATCAAATATGAC
ATACCTGAACCTCCTCAATCTCCAACATAANCCAGCTTAGTGGCCAAATCCCACTGCAGT
TCAATCTTCTT

Homology of Contig U35_20577 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34270.1	608	1e-79	protein\|inactive receptor kinase At1g27190 precursor, putative, expressed
Brachypodium v1_2	Bradi2g25320.1	605	1e-80
Arabidopsis v10	None