barSeed - Barley Seed Development Database

Probe CUST_17570_PI390587928

Source Contig U35_18260

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17570_PI390587928	Hv_44K_v2	TACAAAGGCCTTCCACACGAGGGACGTTGTAATTGTAATTACTTCATTCAACACGACCGG	1776	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.979	4.491	3.742	0.699	0.574	0.654
Raw	48.664	83.547	55.203	18.481	2.710	5.687

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67247.2	1411	7e-23	15 - 74	98	59 / 60	minus	ABC11240 ABC17576
MLOC	MLOC_67247.3	1958	7e-23	10 - 69	98	59 / 60	minus	ABC11240 ABC17576
MLOC	MLOC_67247.1	3893	7e-23	66 - 125	98	59 / 60	minus	ABC11240 ABC17576
JLOC1	JLOC1_44379.2	3551	4e-23	3316 - 3375	98	59 / 60	plus
JLOC1	JLOC1_44379.1	2113	4e-23	1878 - 1937	98	59 / 60	plus
Harvest21	ABC11240	1852	3e-25	1749 - 1808	100	60 / 60	plus	ABC11240
Harvest35	U35_18260	1891	3e-25	1777 - 1836	100	60 / 60	plus

Contig Sequence (1891 bp)

>U35_18260 1891 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAAGCTAAGCTGCAGCCAGCCGCTCTTGTCCATCCTCCAG
GTCGCACAAGGAGTCAAGGAGGGCGAACATGGCAGGGCAGGGCAGCTACAGCCGGCTCGC
CGCCGACGAGGCCGCCGGGACATCCGCCGGCGACGACTACGACTCGAAGAAGCTCAGGCT
GCTCGGCTACGAGCCTCAGCTGAAGCGCAACCTCTCGCTGCTGTCCAACTTCTCGGTGAC
CTTCTCGATCGTGTCGGTGCTGACGGGCATCACGACGCTGTACGGGACGGGGCTGGGGTT
CGGCGGGCCGGTGACCATGGTGTACGGCTGGCCCATCGCCGGCGCCTTCACCGTCGTCGT
CGGCCTGGCCATGGCCGAGATCTGCTCCGCCTACCCCACCTCCGGCGGCCTCTACTTCTG
GAGCGCCAGGCTCTGCAGCCAGCGCCGATGGGGCCCCTTCGCCTCATGGCTCACCGGCTG
GTTTAACATCGTTGGACAGTGGGCAGTGACAACGAGCGTGGACTACTCGCTGGCGCAGCT
GATCAAGGTGATCATCCTGCTGAGCACCGGCGGCAACAACGGAGGAGGGTACCTGGCGTC
CAAGTACGAGGTGATCGCCATCCACGCCGCCATCCTGCTCAGCCACGCCCTCATCAACAG
CCTCCCCATAGCATGGCTCTCCTTCTTTGGCCGGTTTGCGGCGGCTTGGAACATGCTAGG
TGTCTTTGTCCTGATGATTGCTGTGCCGGCTGTTGCTACCGAGAGAGCCAGTGCCAAGTT
CGTCTTCACCAATTTCAACACCGACAACAACGCTGGAATTCACAGCCATGTCTACATCTT
TCTCCTGGGGCTCCTGATGAGCCAGTACACGCTCTTAGGTTACGACGCGTCGGCGCATAT
GACGGAGGAGACCAAGAACGCAGACAAGAACGGGCCGATCGGGATCATCAGCGCCATCGG
CATATCGATAGTGGTCGGCTGGGGTTACATACTCGGGGTCACGTTTGCTGTCAAGGACAT
ACCCTCCCTGTTGAGCCCCGACAATGATGCTGGAGGGTACGCCATTGCCCAGGTCTTCTA
CCAAGCCTTCAAGAGCCGCTACGGCAGCGGCGTCGGCGGGATCGTCTGCCTCGGGATCGT
CGCCGTCGCCATTTACTTCTGCGGCATGAGCTCCGTCACGAGTAACTCAAGGATGGCGTA
TGCATTCTCGAGAGACGGGGCGATGCCGCTGTCATCCGTGTGGCACAAAGTGAACGAGCA
CGAGGTGCCCATCAACGCCGTCTGGCTCTCGGCTTTCGTCTCCCTCTGCATGGCGCTGCC
GTCGCTGGGTAGCCTGGTGGCGTTCCAGGCCATGGTGTCCATCGCCACGATCGGGCTCTA
CATCGCCTACGCGCTGCCCATCTTCTTCCGGGTGACGCTGGCGCGGAAGCACTTCGTCCC
GGGACCCTTCAACCTCGGACGCTACAGCGTGCTGGTGGGGTGGGTGGCCGTGCTCTGGGT
GGTGACCATCACCGTGCTCTTCTCGCTGCCGGTCATGTACCCGGTGACCAGGGACACGCT
CAACTACACGCCGGTCGCCGTCGGCGGGCTCTTCATCCTCGTCTTGACGTCGTGGGTCGT
CAGTGCCAGGCACTGGTTCAAGGGACCCGTCACCAATTTGAGCGGCTAGCTTCAAAGTGT
GTTGACGGAACGCCGTGGAGGATTACTTGTACGCTGCAGCTATATGTAGGCTGGTTGCAT
GGTTGTGTATGAGATTCTTAATAGAGGCTCATGGAATACAAAGGCCTTCCACACGAGGGA
CGTTGTAATTGTAATTACTTCATTCAACACGACCGGCCGGGAAGGCGCCGTGTTTTTTTA
TTGAATTTGGGGTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g42234.1	533	protein\|amino acid permease family protein, putative, expressed
Brachypodium v1_2	Bradi2g43062.1	528
Arabidopsis v10	AT2G01170.1	516	\| Symbols: BAT1 \| bidirectional amino acid transporter 1 \| chr2:102364-104462 REVERSE LENGTH=516