barSeed - Barley Seed Development Database

Probe CUST_17569_PI390587928

Source Contig U35_32554

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17569_PI390587928	Hv_44K_v2	ATATCCGAGCAAATCTTGAGGCTTCAGCAGGAAATTGAAGCAGAGCTTCATGGTGACGAT	331	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.715	1.091	1.866	1.205	0.729	0.712
Raw	175.719	152.703	255.280	239.270	55.318	59.277

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368865	2908	2e-24	391 - 450	100	60 / 60	plus	ABC08240 ABC08241
MLOC	MLOC_74063.1	2459	2e-24	533 - 592	100	60 / 60	plus	None
MLOC	MLOC_74063.2	2331	2e-24	491 - 550	100	60 / 60	plus	None
JLOC1	JLOC1_49343.1	2347	8e-25	507 - 566	100	60 / 60	plus
Harvest21	ABC16436	610	3e-25	127 - 186	100	60 / 60	plus
Harvest21	ABC16435	798	3e-25	298 - 357	100	60 / 60	plus
Harvest35	U35_32554	431	3e-25	332 - 391	100	60 / 60	plus
Harvest35	U35_1526	926	3e-25	428 - 487	100	60 / 60	plus

Contig Sequence (431 bp)

>U35_32554 431 Hv_44K_v2
CACTAGGAGAGAGGTCGCAGACGGAACCCAACCCTCCCCCAAGAGAAGAAGGAAAAAAAA
AGCTCGGATTCCTCCGCGATTTCCTCCCCGGCACCCCGCCGATTCCCTGTCGATCGAGCT
GCCGCGGTGCCTTGGTCGGGTTCGGGACCCTCAGCCATGACGACAGACCAGCCAGTGATC
AGCCTGCGCCGCCTCCGGCTCCGGCGACTTCCTCCGCCCGCACGGCGGCGGCGCCTCCGG
CGTCTCCAGGATTGGTGACTTGCATTTTGAGACACGTGAGCGTATTCGTTATTCAAGAGA
TCAACTTCTTGACCTGCGAAAGATTACCGATATATCCGAGCAAATCTTGAGGCTTCAGCA
GGAAATTGAAGCAGAGCTTCATGGTGACGATCAGAGCTGGGTTCGCAACGATTCGAATGT
GCAGTTGCAGA

Homology of Contig U35_32554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None