barSeed - Barley Seed Development Database

Probe CUST_17567_PI390587928

Source Contig U35_18262

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17567_PI390587928	Hv_44K_v2	TGTGTCTTGTCATAGTGCATTCTTGATAACCATGCGATGATTATTGTTTTGTAGTAGCAG	1876	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.424	1.264	1.378	0.834	0.321	0.271
Raw	769.775	1075.880	1005.788	965.606	131.048	119.791

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71554.1	1633	7e-23	653 - 712	98	59 / 60	plus	ABC11492
Harvest35	U35_18262	1953	3e-25	1877 - 1936	100	60 / 60	plus

Contig Sequence (1953 bp)

>U35_18262 1953 Hv_44K_v2
CCCCTCGAGACCGAACGCTAGGGTTCCTTCCACCACCCCCCTGTTTCCTCCCCCACCCAC
CCCCATGGCCGCCGCCGCCGCCTCCGCGGAGGCCGCCGCCATCACGCGGCGCTTGGCCTC
CTGCAACACCGGCGCCCGCGAGCGCGCCGTCCGCTACCTCCTCGCCGACTTCCTCCCCGC
CTCCGCGCCGCACCTCTCCGACATCGACCTCCTCAAGCTCTGGAAGGGCCTCTTCTTCTG
CTTCTGGCACGCCGACAAGCCGCTCTACCAGGCCGACCTCGCCTCCCGCCTCGCCGCCGC
CGTCTCCGCCGCCGCCACGCCCGCCGCCGCCGCCGACTTCCTCGCCGCCTACCTCGCCAC
CATCCGCCGCGAGTGGTCCTCCATCGACGTCCACCGCCTCGACAAGTTCTACCTCCTCAA
CCGCCGGTTCCTCCACCACGCCTTCCTATTCCTCGGCGCCCGCTCCTTCGCGCCCGCCGT
CACCGCCCAGATCGTCTCCGTCATCTCGGAGAAGGCCGTCCTCCCGGAAGCCGACAACGC
CACCGGCCGTGGACTCGGTTACCATGTCGCCGATGTGTTTCTCGACGAGATCTTGCCCAT
GCTCCCGGTTAGCTTGCAGTCGATGGAGCTGCTGTTGGCCCCCTTCTTCACTGTGCTGGA
GAAGTCCACCGACAGGGTGCTGGTGAGTAAGGTCAGGTCCAGCTTGTTTGAGAGGTTTCT
GGTGAGCGGCAGTCAGCTGCTCGAGATGACGAGGAAAGGTGAAGAGGTGGAGAAGGGGAG
TGTGGAAGAGAAGCTTGGGCAGGTTGGCCTGTTGTTTGGATTCAGCAAGAGATTCCTGGA
TATTGGGGCGAATGCTGAGACCGTGCAGGGGAATCGGAAGGTGGTGTTTGGGCTGAGGGA
TGCGTTCCTTAAGCTCGAAAAGGGATTGGAGCTGTCTGGGGTTAAGATTTCTGAGCCAGA
GTTTCAGGGCACTCAGCCACCAATGGTGGCAGTGGTAGAAAATGGCATGGATTTGGATGA
GGCAAAGGTGGAAAAGAAGAAGAAGAAGAAGAAGGCAAAGAAGGCTGCATTAGCTGAAGG
TGGGGAGGAGGAGGATGAGGTCAAGGCTCCGAAGCAAGAGAAGAAGGTGAAGAAAGACAA
GAAAAAGGAGAAAAAGGAAAAGAAGAAGAAGAAGAATAAGGTGGAGGATAGTGATGGAGG
GGATAGCAGTGAGCAGAGTATAGATGCCACATCAGAGGACCAGCAGATGGGCGATGACAC
TGATGCCATTACATTTGATGACGCTTCGATGTCCAATCTTCAAAAGCAGTTTGAGAAGGT
TGCTGCAGAAGCAGGGATGCCGGTGACACCAGTTACTGCAATAGTGGCAAAGAAGAGGAA
GCGCTCAAAATCTGCAGATAGGTCATCAGAATCTTCTGGTGGAGATGTTGGTAGCAAAGG
CAATGTTCCTGCTCAGGATGGAGATAAGAGTGGTAAGAAAGTGAGGTTCTCAATGAAGAG
TAATCTAGTTTGGAACCCTCCGACTCCTTTACCACCACAGTGCTTGAGGCTCCCACCATC
TGCTACCCCAAGAGGGAGTGCACTAAAAAGTGGAGTTCGGCCTGGGCCTATAAAGGAAAG
CTCTACGCAGGTGAAGAAGGCCAAGGCAAAAGCAAAGTCTGCAAAGAAGGTGTTGAAGAA
GAGCCCTTCCTCGGCTGTGAAGCGCTTGCGGAAGTTGCAAACCTTCTCTGCGTGAAACTC
TTGAATGTATGATGGCATGTTGGCCGTTCCATTCTGCCTTTCAAATTGTGCTCTCCATAA
CTTGATTCTTCTCCATTAGGTAGTCTTATACACTCTTGGCTTGCTACCTTTGCATTATTT
ATGGATTGCTTAATTATGTGTCTTGTCATAGTGCATTCTTGATAACCATGCGATGATTAT
TGTTTTGTAGTAGCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18262 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56350.1	559	1e-122	protein\|nucleolar protein,Nop52 containing protein, expressed
Brachypodium v1_2	Bradi5g24580.1	565	2e-128
Arabidopsis v10	None