- Probe CUST_17565_PI390587928
- Source Contig U35_32557
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17565_PI390587928 | Hv_44K_v2 | GACAAGTTCGCGCTCCTCCCTGCCTTCCTCAAGGGTAGAGGTCTTGTGAAGGAGCACATT | 354 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.530 | 1.379 | 1.283 | 0.712 | 0.699 | 0.719 |
| Raw | 266.362 | 334.909 | 303.702 | 246.205 | 88.222 | 101.816 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61052.6 | 2949 | 7e-23 | 356 - 415 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_61052.4 | 3341 | 7e-23 | 2951 - 3010 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_61052.5 | 3097 | 7e-23 | 2692 - 2751 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_61052.1 | 3379 | 7e-23 | 2975 - 3034 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_61052.2 | 3348 | 7e-23 | 2940 - 2999 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_39859.1 | 3274 | 4e-23 | 347 - 406 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_32557 | 414 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus |
Contig Sequence (414 bp)
>U35_32557 414 Hv_44K_v2 GTGCATACCTTGCCGCCCCGAATCCACCGCCTCATTCCCGGCGTCTCTCGCCGCCGAGAC CCCTTTTCCACCCCCACCCCCTCTGTCTCTCCTCTGTACTCGACCTCCCATCCCTCACCG CCGCCAGCCCCCCTCCCCACTGAAACCGCCCTCCACCTGCTGCGCCGCTGCCGCCAGCCA GCCCCTCCACCCAAGGCGCACGCCTCCTCCGCCGCCAGCCAAGGGGGTTCAGTCAACTGA ATCCCCATGCCCCCCGCTACGTCCGCCCCCGATGCCCCAGTGGCGGAGGGGGACGCGGAG GCCCCGCCGGTGCCGACTTACCGGTCACTGGCAGCGCCGGTCAGCAATCCGGTCGACAAG TTCGCGCTCCTCCCTGCCTTCCTCAAGGGTAGAGGTCTTGTGAAGGAGCACATT
Homology of Contig U35_32557 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |