barSeed - Barley Seed Development Database

Probe CUST_17564_PI390587928

Source Contig U35_18264

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17564_PI390587928	Hv_44K_v2	CGTATGACTTCCTATCAGAAATGACACAGCAGAAATAAATAATCGTACTGATTACTCCAA	538	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.089	0.307	0.695	1.465	3.110	5.127
Raw	8.692	52.225	99.145	297.602	234.115	439.470

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366189	3870	2e-24	2237 - 2296	100	60 / 60	minus	ABC05478 ABC05479 ABC08824
MLOC	MLOC_64919.1	684	2e-24	53 - 112	100	60 / 60	minus	ABC08824
Harvest21	ABC08824	639	3e-25	539 - 598	100	60 / 60	plus	ABC08824
Harvest35	U35_18264	639	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_18264 639 Hv_44K_v2
AACGCCGCGGGAGACGGATTCACGCAAACACACCACGACAAGCGAAAGGAGGGCGCAGGC
ATGGCGAAGAGCGGCACGGAGGAGTGGCGTCGCAACGCCGACACGCACAAGATGAGCCCG
GAGGAGGTCCGGGCCGCCGGGGTGGAGGCGTCCATGCGCCCGCCGGGCCGTGGCGGCGGT
GCCGGGGAGGTCCTTCACCAGCGAGGTGGCCGCCTGCCGTTCGGGCCCGGGACGATGGCG
CTGATGGGGTTCGGCATCGTCGGCGTCATCGGCTACCTGGTGCTGTACCAGAAGGCGAGG
CCCGGCACGCCGGCCACGGAGGTCGCCAAGGTGGCCGTCGGACACGGCGACCCTGCCGTC
GGCCGTGAGGTCCAGAAGCGCCAAGACGAAGCGCCGCCAGCGCCACCGTCACGAGAAGGG
AAGTAGACTTGTTTAGTAGCAGAAGAACTAGAGGATTTGCGGCGTTTGTGCTTCGAGTTC
TACTCCATTTGATCTGCTAGCCGCGCTTCTCAGCTATGGTATCTTTTGTCGTGGACCACG
TATGACTTCCTATCAGAAATGACACAGCAGAAATAAATAATCGTACTGATTACTCCAAAA
AAATAAAATGTACTACTGATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04100.1	122	1e-60	protein\|expressed protein
Brachypodium v1_2	Bradi4g08620.1	128	7e-71
Arabidopsis v10	None