barSeed - Barley Seed Development Database

Probe CUST_17563_PI390587928

Source Contig U35_32558

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17563_PI390587928	Hv_44K_v2	CTTGCTGGAGTCAAGTCTGTCACTATACATGATGTGAAAATGTGGAGATGTGGGACTTGT	435	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60529.1	3467	7e-23	186 - 246	98	60 / 61	plus	ABC08053
JLOC1	JLOC1_39480.1	3614	4e-23	188 - 248	98	60 / 61	plus
Harvest35	U35_32558	495	3e-25	436 - 495	100	60 / 60	plus

Contig Sequence (495 bp)

>U35_32558 495 Hv_44K_v2
AACCCCAAACGCTCTGCCACAACACCAGCGCCGCCTCCCCCTTCCCCCGACGCCGCCCCA
CGAATCAGTACTCCCCACCGAAGCTCCCGCCCCGCCCGGCCCCCGAAACCTAGCCGCCAC
GCGAAGCACCCCCGCGCCGGCGAGGCCGCCGCCGCCGGCAGGGGCCTGCGCGCCATGCTC
CCGTCCAAGAGGCCGTCCGACGCCGCAGCGGCGGGGGACGAAAGCGGCGGCCGCGGAGGG
GACGCCAAGAGGCCCAAGCTCGACGCAGGCGGCGGCGGGGGCCCGAACGGGGCCGCGCCG
CAGGAGATCGACGAGGACCTCCACAGCAGGCAGCTCGCCGTGTACGGGAGGGAGACCATG
CGGCGCCTCTTCGCCTCCGACGTCCTCGTCTCCGGGCTCAACGGCCTCGGCGCTGAAACC
GCAAAGAATCTTGCCCTTGCTGGAGTCAAGTCTGTCACTATACATGATGTGAAAATGTGG
AGATGTGGGACTTGT

Homology of Contig U35_32558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None