barSeed - Barley Seed Development Database

Probe CUST_17558_PI390587928

Source Contig U35_44531

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17558_PI390587928	Hv_44K_v2	CACCCGAATTTCAAGTCGGGTGATCTTGTTTGGGGCATGAGCGGATGTGAAGAATACACT	346	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52865.1	1507	2e-24	612 - 671	100	60 / 60	plus	ABC05939 ABC05940
JLOC1	JLOC1_33903.1	1512	8e-25	612 - 671	100	60 / 60	plus
Harvest21	ABC42377	419	3e-25	347 - 406	100	60 / 60	plus
Harvest35	U35_44531	419	3e-25	347 - 406	100	60 / 60	plus

Contig Sequence (419 bp)

>U35_44531 419 Hv_44K_v2
TCAACACCCCCGTCCTCGCCGTCTCAATTCTCATCGGCGGCCTGATACGTCATCGAAGCA
AGAAGGAGCAATGGCGGCGGCGGCGGAGGTGAGCAACAAGGGGGTGATCCTGAAGCAGTT
CGTGACGGGGTTCCCCACGGAGGACGACATGGAGGTCGTGACGGGCGCCGTTCGGCTGGC
CGTGCCGCCTGGGTCGGCGTCCGTGATGGTCAAGAACCTCTACGTCTCCTGCGACCCCTA
CATGCGCAACCGGATGAGCGAACACAACGAGGCCAGCTACATCGAGCAGTTCGTGCCAGG
GGAGGTTTTGGCCACTTTTTCAGTAGGAAGGGTGGTAGCATCCGGGCACCCGAATTTCAA
GTCGGGTGATCTTGTTTGGGGCATGAGCGGATGTGAAGAATACACTNTGATCACTAATC

Homology of Contig U35_44531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g39970.1	350	4e-54
Arabidopsis v10	None