- Probe CUST_17556_PI390587928
- Source Contig U35_44532
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_17556_PI390587928 | Hv_44K_v2 | GTGTTCATGACTGATCTATGTGTGTCGATGGAATGTCAAAAATGTTGATATTTTCTCTCT | 107 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_52865.2 | 471 | 2e-24 | 404 - 463 | 100 | 60 / 60 | plus | None |
MLOC | MLOC_52865.3 | 829 | 2e-24 | 762 - 821 | 100 | 60 / 60 | plus | ABC05939 ABC05940 |
MLOC | MLOC_52865.1 | 1507 | 2e-24 | 1442 - 1501 | 100 | 60 / 60 | plus | ABC05939 ABC05940 |
JLOC1 | JLOC1_33903.1 | 1512 | 8e-25 | 1442 - 1501 | 100 | 60 / 60 | plus | |
Harvest21 | ABC42378 | 357 | 3e-25 | 108 - 167 | 100 | 60 / 60 | minus | |
Harvest35 | U35_44532 | 357 | 3e-25 | 108 - 167 | 100 | 60 / 60 | minus |
Contig Sequence (357 bp)
>U35_44532 357 Hv_44K_v2 TTGGACAAAATCCATATCCAAAGGGCTACACTTAAACAATAATATCTTACTTTATGTCTA TATATATATATATATATATATATATATATATATATAAAGGTAAAAATAGAGAGAAAATAT CAACATTTTTGACATTCCATCGACACACATAGATCAGTCATGAACACAGACACTTCCACA TATCCAATATGAATATATTGCACTCCCGTATCTTTTCCGTTAGCCTGTCCCGTCACTCAT GTGCGATGGTGACCAGCTGCTTCCCAATGTTGCCCCCGGAAAAAAGTCCGATGAGCCCCG TCGGCACGTTCTAAATCCCCTCCGCAACATCCTCAACAACTGTGATCTTCCCTTCCT
Homology of Contig U35_44532 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |