barSeed - Barley Seed Development Database

Probe CUST_17550_PI390587928

Source Contig U35_20580

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17550_PI390587928	Hv_44K_v2	TACTTACCTAAATAAGGTCATTATTGGTAGTGAAGAGGGACCCTTGCAGCTGTGGAATAT	610	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363137	3081	2e-24	579 - 638	100	60 / 60	plus	ABC24129
MLOC	MLOC_5664.1	3200	2e-24	2626 - 2685	100	60 / 60	minus	ABC24129
MLOC	MLOC_5664.2	3036	2e-24	2457 - 2516	100	60 / 60	minus	ABC24129
JLOC1	JLOC1_3658.2	3419	8e-25	322 - 381	100	60 / 60	plus
JLOC1	JLOC1_3658.1	3046	8e-25	322 - 381	100	60 / 60	plus
Harvest21	ABC39260	589	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_20580	673	3e-25	611 - 670	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_20580 673 Hv_44K_v2
AAACAAAACCACCCAAGCTGACTGACCTACCGCGGCCTCACCCTTTGCCCCCCCTTCCTC
CTCGCGCCGCCGCCCCAAACCCCCTCTAAAACCCTCGCCGCCGGCGCACCCTTCAGAGTC
CAGACCAGAGAAGCCCTCGACGTCCGCCGCGGCCGGGGGGAGGGATGGGGATCTTCGAGC
CGTTCCGCGCGATCGGGTACATCACCACGGGCGGCGTGCCCTTCTCCCTGCAGCGCCTCG
GCACCGAGACCTTCGTCACCGTCAGCGTCGGCAAGGCCTTCCACGTCTACAACTGTGCCA
AGCTCACGTTGGTCCTTGCCGGACCTCAACTGCCCAAGAAGATCCGCGCCCTTGCATCCT
TCAAGGAATACACATTTGCTGCGTACGGAAGCGATATCGCGGTTTTCAAACGGACTGATC
TGGTGGTTACCTTTACTAAACATGAAGAGAAGGTCAACATGTTGTACCTGTTTGGAGAAT
ACATTCTCAGTGCAGATATTAAAGGTAATATATTTATCTGGGCCTTCAGAGGAGCTAAAC
CAAGCAGTGAGCCTGTTGGAAACATATCACTTGGAGACAAGTTTACTCCAACCTGCATTG
TGCATCCGGATACTTACCTAAATAAGGTCATTATTGGTAGTGAAGAGGGACCCTTGCAGC
TGTGGAATATCAG

Homology of Contig U35_20580 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43690.1	904	2e-99	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g30580.1	905	3e-103
Arabidopsis v10	AT4G04940.1	910	4e-75	transducin family protein / WD-40 repeat family protein \| chr4:2511212-2517052 REVERSE LENGTH=910