barSeed - Barley Seed Development Database

Probe CUST_17546_PI390587928

Source Contig U35_20584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17546_PI390587928	Hv_44K_v2	CAGTGCTCTGTAGTTTACGTTGTCAGTGTGTAATGCAAGGAGAAAATGAACCGCAAAAAA	1742	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.052	1.654	1.241	0.897	0.316	0.336
Raw	631.104	1473.827	1005.729	1137.574	142.829	163.790

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11946.1	383	3e-21	303 - 356	100	54 / 54	plus	ABC13863
JLOC1	JLOC1_7970.1	790	2e-21	505 - 558	100	54 / 54	plus
Harvest21	ABC13863	1813	3e-25	1743 - 1802	100	60 / 60	plus	ABC13863
Harvest35	U35_20584	1813	3e-25	1743 - 1802	100	60 / 60	plus

Contig Sequence (1813 bp)

>U35_20584 1813 Hv_44K_v2
TTTCCGCCCAAAAAAATTTCCAGCAATAGCAAAGCTCACCAGAATGCGGCCTCTCCTCAC
CGTCGTCGCCGCCGCCGTCCTCCTCCTCCTAATCCCCCTCGCCGCCGGCCAGGGATTCCG
CGGCTTCTCCTACCTCCTCGACTGCGGCGCCGCGGCCTCCTCCACCGACACCCGCGGCCT
CCGCTGGGACCCCGACGGTCCCTACGTCTCCGCCGGCTCCGCCCGCACGCTCTCGGTCCA
GGGCCTCCTCGACCCCACCCTCGCCTCCCTCCGCGCCTTCCCGTACCGCCCCGCCGTCAA
GTTCTGCTACGCGCTCCCCGTCGACCCCAACCGCCGCTACCTCCTCCGCCCCACCTTCTT
CTACGGCTCCTCCTCGCCGCCCCCGCCCGTGTTCGACCTGATCGTCGACGGCACCTTCTG
GACCGCCGTCGACACCGCCGATGACATCCTGGCCGGCAGCGCCTCGCACTACGAGGCCGT
GTTCCAGGCCAGGGGCAGGAACTTGACCTTCTGCCTCGGTGTCAACTCCAACTACACCAC
CTCCGGCCCGTTCATCAACGCGCTGCAGGTCATCCAACTCCATGATTCGGTGTACAACGC
CACGGATTTCGGAAGCAGCGCCATGGGGCTTATTGCGCGCACCAAGTTTGGCTCGACTGG
CGACGTCGAGAGGTACCCTGATGACAGTTTTGACCGCTATTGGCAGCCATTTCCAGACAA
CAAACATGCTGTCAGTAGTACCCATAATGTTACATCAGCTGATTTCTGGAATCTTCCCCC
TCCTGATGTATTTAATACAGCTTTGGTGGCAGAGCAAAATGCACCCTTGGTGTTGCAATG
GCCTCCAATATCTCTTCAGAATGATAGCTATTATGTTGCTCTTTATTTTGCTGATACCTT
AGCTGATAGTTCGAGGACCTTTGATGTGAATATAAATGACTACCAGTTTTACAAAGATCT
GACAGCAACATCAGCTGGGCTTTCTGTCTTTGCAACTCAATGGATTCTCTCAGGCCTAAC
CAGAATTATATTGACTCCTACGTCTGTTCTTCCGCCACTTATCAATGCTGGTGAAGTCTT
TGGACTTTTTCCCATCGGAAGACTGACAATTACGCGGGATGCACTTGCTATGGAGAGTAT
GAAGAGAAGCCTCCAAAACATACCTGATGATTGGATTGGAGATCCATGTATGCCTCACGG
ATATGCTTGGACTGGAGTTACATGTCTTGAAGGACAAAACATACGTGTCATTTCATTGAA
CTTTTCAAGTATGGGCATCTCCGGATCTCTCTCACCTGACATTGGAAATCTGACTGCTCT
TACTGATATATTTTTGGCAAACAATAGCTTGTCTGGACCTATTCCTGATCTCACCAAACT
GGGGAAACTCCAACGACTGCACCTGAATGATAACAAGTTGAATGGAACAATACCTCAGAC
ATTGGGGACAATTCAGCCCTTGCGTGAACTATTCTTGCAAAACAATGAGCTGGGTGGAGC
AGTTCCACTGAACTTGCTGAACAAAGCAGGGTTGACTCGCAAATTTTGTCCGGGCAATCA
GTTCTCACAACCACCGTGCTGACGGTCAAACATTTTATCGAAGACAGTAGGATGGTGTGT
TTATTCTTTTAGGATGGGTAGACCAAGATTTTGTAACCAGTCGAGTGTTTGTACAGTAAA
ACGATTGGAATCCAGTGAAACGAGTTGGCGGAAGCAGGTGAAGATAAACAATTCTGGTTG
TACAGTGCTCTGTAGTTTACGTTGTCAGTGTGTAATGCAAGGAGAAAATGAACCGCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_20584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32660.1	511	0.0	protein\|leucine-rich repeat family protein, putative, expressed
Brachypodium v1_2	Bradi2g26467.1	514	0.0
Arabidopsis v10	AT3G05990.1	517	3e-155	Leucine-rich repeat (LRR) family protein \| chr3:1797116-1799732 REVERSE LENGTH=517