barSeed - Barley Seed Development Database

Probe CUST_17543_PI390587928

Source Contig U35_20587

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17543_PI390587928	Hv_44K_v2	GAATAACATGCGGACTTTCCCTCTGATTTCATCACTGTTGGTCTTGTTATCATTAAAAAA	1074	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.210	4.071	1.031	0.976	0.535	0.787
Raw	122.032	125.616	29.447	45.700	7.685	13.560

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_20587	1145	3e-25	1075 - 1134	100	60 / 60	plus

Contig Sequence (1145 bp)

>U35_20587 1145 Hv_44K_v2
GCTTTACGGCTTGAGGGTTTGCAATATGAAGTACTGCAGTGGTGCATTTGTCGATTGGAA
GCATGGTTTGCCACAGACGTGGATAATATATCTTTGAAAAATTGGGATCAGGAACATGTT
CTTACTGGTGGACATGGGCTTATGGTGAATGGCTATGACCCTGTTATCAAAGCTCTCTCT
CGAGATCTTGATGTCCACCTTAACCACAGGGTTACCAAAATCATCCAGCGGTATAATAAA
GTCATTGTATGCGTGGAAGACGGGACAAGCTTTGTTGCAGATGCTGCTATAATAACTGTC
CCTCTCGGTGTACTCAAGGCAAACATCATCAAGTTTGAACCTGAGCTCCCAGACTGGAAA
CTATCTGCAATCTCTGATCTTGGCGTTGGTCTCGAGAACAAGATAGCCCTTCGGTTCAAC
ACAATATTCTGGCCCAATGTAGAGGTACTGGGCAGGGTTGCCCAAACATCAAATGCATGC
GGCTACTTTCTTAACCTTCACAAAGCCACAGGACATCCAGTCCTTGTATGCATGGTGGCG
GGCAGATTTGCATACGAAATGGAGAAGCTATCAGACGAAGAATCCGTAAACTTTGTCATG
TCACAGCTCAGGAGAATGCTACCAGGGGCCACCGAGCCGGTCCAGTATCTGGTTTCACGG
TGGGGAACTGACCCCAACTCCCTCGGCTCCTACTCGTGTGACTTGGTCGGAAAACCAGCT
GACTTGTACGAAAGATTCTGCGCTCCGGTGGGCAACATGTTCTTCGCCGGGGAGGCCGCC
TGCATAGACCACTCTGGGTCTGTGCACGGGGCGTATTCGTCAGGTATCGACGCTGCAGAG
GACTGCCGAAGGCGCCTCTCGACGCAGCTCGGTATCTCTGACCTGTTCCAGGTCGGGAAG
ATTGTGATGAGGGAGGAGATGACTGAAGTCATGGTCCCCCTCCAGATATCCAGGCTGTGA
AAGGAAGGAAGAACAAGCCTGTCTACTATTCGACACGTGTTCTGTTAACATCGTAGCTGT
AATTTACCTCTGAAACTGTACAATTTCCCAGTGTCTGATCTATGATGTATCTCTGAATAA
CATGCGGACTTTCCCTCTGATTTCATCACTGTTGGTCTTGTTATCATTAAAAAAAAAAAA
AAAAG

Homology of Contig U35_20587 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57560.1	493	0.0	protein\|amine oxidase, flavin-containing, domain containing protein, expressed
Brachypodium v1_2	Bradi5g25740.1	493	0.0
Arabidopsis v10	AT1G65840.1	497	1e-139	\| Symbols: ATPAO4, PAO4 \| polyamine oxidase 4 \| chr1:24490173-24492728 FORWARD LENGTH=497