barSeed - Barley Seed Development Database

Probe CUST_17542_PI390587928

Source Contig U35_20588

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17542_PI390587928	Hv_44K_v2	TATTGATGTAGTTCCATCATTGAAACCTAATACAAGTGTTACTAATGGCTGGTACCGAAA	559	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61836.5	1861	6e-24	1623 - 1681	100	59 / 59	plus	ABC14059
MLOC	MLOC_61836.2	5460	6e-24	5162 - 5220	100	59 / 59	plus	ABC14059
MLOC	MLOC_61836.3	5474	6e-24	5176 - 5234	100	59 / 59	plus	ABC14059
JLOC1	JLOC1_40431.1	4025	3e-24	3836 - 3894	100	59 / 59	plus
Harvest21	ABC14059	635	3e-25	17 - 76	100	60 / 60	minus	ABC14059
Harvest35	U35_20588	635	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_20588 635 Hv_44K_v2
CATTTGATAATTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAGACCTATTCCTACTA
GCAAAAAGGAGGCAGAATTTGCTCTTTCAGCACTCATGGAGATCCCAGCTCAGTTCAAGG
CAACAATGAACCTCCAGCTTCTTGGCAAACAGAGAGGATTTCCGCACCGATCAGTGTTAC
CTCCACCTGTGAGTGTATGTCAACAACCCTCTGGATGTTCAGCAGTCAAGCAAACTCAAT
CGACTGGCACCAGCTATGGGTCGCCACAGAAGAATGCATCGGCACCTCGACAGGACAGTG
ATGTGGGTGATCAGCAGACTTGTCCAATCTGCTGGTCTGAAGCAAAGAACCTGGCTTTTG
GATGTGGGCACCAGACATGCGCCGACTGCGGGAAAGATCTGAAGGTTTGCCCCCTTTGCC
AGAGGGCGATCTCCACAAGGATTAGGCTCTACTGAAGGTCTTGATCGGGAAGCAAGCTAT
ATACTTTGTGCACACTTAGCTTTCGAGAAAAGAACATCGATCTTGCTAAGAAGGAAAGTG
TAAATACATGGCCCCTTGGTATTGATGTAGTTCCATCATTGAAACCTAATACAAGTGTTA
CTAATGGCTGGTACCGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_20588 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38600.1	397	1e-82	protein\|copine, putative, expressed
Brachypodium v1_2	Bradi3g39190.3	331	6e-92
Arabidopsis v10	None