- Probe CUST_17534_PI390587928
- Source Contig U35_46219
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17534_PI390587928 | Hv_44K_v2 | TGTGGTAAACTGGGTTTAGGGTCCATCAATTTGTCCTGTGGAAACATTTCAGTCCATCAA | 59 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.033 | 2.604 | 0.852 | 0.921 | 0.290 | 0.659 |
| Raw | 153.727 | 211.948 | 61.426 | 115.997 | 11.461 | 28.579 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_78754.1 | 1114 | 3e-21 | 34 - 93 | 97 | 58 / 60 | minus | ABC11112 ABC45979 |
| JLOC1 | JLOC1_52484.1 | 1195 | 2e-21 | 977 - 1036 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC45979 | 365 | 3e-25 | 60 - 119 | 100 | 60 / 60 | minus | ABC45979 |
| Harvest21 | ABC11112 | 1016 | 6e-22 | 939 - 998 | 97 | 58 / 60 | plus | ABC11112 |
| Harvest35 | U35_46219 | 365 | 3e-25 | 60 - 119 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_19394 | 1016 | 6e-22 | 939 - 998 | 97 | 58 / 60 | plus |
Contig Sequence (365 bp)
>U35_46219 365 Hv_44K_v2 TTTTTTTTTTTTTTTTTATTTTTTTTGTTTTTTTTTTTTAGACCAATACATTTCTCAAAT TGATGGACTGAAATGTTTCCACAGGACAAATTGATGGACCCTAAACCCAGTTTACCACAG GGGCAAACATGCGAAACTACATGCCCGTACCCAGCATGGGCTGGTAGGCACATGTACAGT ACAACCGACTAACTTTGTCGGCCCAGTGGTTGGGACTCCTTCCACCCCGCACTTGGCCTT TGGTCATAACTTTTACTTTTAAAAACCGGCACCGAAACCCGTCCGCTTCATTATTTTAAT AAACTCCTCCATGTGGACCTCGCCGTCACCGTTTTCGTCGGGGGCCTCAATCATTTCCCT GACCT
Homology of Contig U35_46219 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |