barSeed - Barley Seed Development Database

Probe CUST_17533_PI390587928

Source Contig U35_22260

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17533_PI390587928	Hv_44K_v2	ATGCTTTGCCTTCAGCACAATTGGGTGCTTGGCCATCTATGGTGGATTCATTTTATCGTC	1256	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1313.1	2259	2e-24	1286 - 1345	100	60 / 60	minus	ABC16838
JLOC1	JLOC1_808.2	2351	8e-25	855 - 914	100	60 / 60	plus
JLOC1	JLOC1_808.1	2279	8e-25	783 - 842	100	60 / 60	plus
Harvest21	ABC18154	1370	4e-24	1257 - 1316	98	59 / 60	plus
Harvest35	U35_22260	1424	3e-25	1257 - 1316	100	60 / 60	plus

Contig Sequence (1424 bp)

>U35_22260 1424 Hv_44K_v2
GCAGATCATGAGTGTCAGGAGAGAGCAGAGGGAGAAAGAAAATAGATTGAAAATAAGGAC
GGCAAAGGCTCCCCGCAAGCAGCATCAAATGTCGCTACACAGTTCTAACAGTTCAAGTAT
TTGTAAGGGGACAGTTTCTTTGGATGGAGAACCTGCGAAGAAAGTTTCTTTGGGTTCTGT
CCTTGCAGTTGAAGGAAGGGTCCTTGACCACGCCGAACCATCATCTTCATTCATGAATGA
TACAGCTTCAATGACACCCATAGGGCGGCCACCTTCAGCCAACACAGGACCTCGTACAAA
CTACTGTGCAATGAAGCCTATCGGAAGCCAGTCAACCTCTGACTTGATAACTTCTATTGC
CGCAACAAAGCTTGCGGCATGCTTCTCAGAAAGCAATAATAAAACATCGCCAATTGGCAC
TCCATTTAACATGGGCAACTGGGATAGTTCACAAACGAACCAGCAGGTTATGCCATTAAC
TCAAACTCAACTTGAGGAAGCGATGAAACCAGAAAAGTTTGAACAAGCAGGTTCTGGCTT
TCCATTGGAGTCCAATAATGCTCTATCTCCTACAGTAACCACGGACGTGGCATACACATC
ATCTGCTAGCCCTATCAACTCTCTTTTGGCTGGGGAGAAGATTCAGTTTGGGGCAGTTAC
ATCGCCAACCGTACTGGCTCCGATCACCCGAACAATTTCAAATGGGCTTGGTGCTCCAGG
TTCATCTTGGCCTGAAATGAAGATTGACCGAAATTTGCCTGGTGATAGCAGTGCTGCTGC
TGTTTTGTTCGATAAGGAGAAGGCTACTACTAAAGATCAATGTCAAGACTCAGAGGAGGC
TGAAGCTCAAGCTGAGGCTGAAGCAGCTGCTTCTGCTGTGGCTGTTGCAGCTATTTGTAC
TGATGAGGCAGTTGGAACTGCAGCTTCTGCTTCAGACAAAAATAGCTTTAGCAGTAAGGA
TCTCACTGGGTTAACAGCTGGAGGGGCAATAACAGGTCAACCTGGTCAATCATCTAGAGA
GGAGCCACTGACGGTTGCTCTTCCAGCAGACCTGTCAGTTGACACTCCGTCAATGTCCCT
GTGGCCATCTTTACCAAGCCTACAGGTGTCAGGGCCAACGCTTTGTCAGTTCCCGATTGC
ACAGACGTCCCACTTCTCTTGCTTCGAGATGAACACAATGTTAGGAGCACATCCTTTTGC
ATTTGGACCAAGTGATGAATCTGCTGGCACTTTGGGTCAACAGCCTCAAAGAAGCAATGC
TTTGCCTTCAGCACAATTGGGTGCTTGGCCATCTATGGTGGATTCATTTTATCGTCCCCC
TACTGGATTCGCTGGTCCTTTCATTAGCCCTGGAGGAATCCCAGGCGTGCAAGGTCCTCC
ACATATGGTGGTCTACAACCACTTTGCCCCACTTGGGCAATTTG

Homology of Contig U35_22260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g27820.1	779	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi1g60500.2	2281	0.0
Arabidopsis v10	None