barSeed - Barley Seed Development Database

Probe CUST_17532_PI390587928

Source Contig U35_22261

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17532_PI390587928	Hv_44K_v2	TAGTAGTACTATTAAATCGTAAGGCGCCCTCTGTTGCATTCGCCACAGTTGTGTTTGGCA	929	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.541	2.508	2.283	2.952	2.985	2.655

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68996.1	720	3e-21	161 - 220	97	58 / 60	minus	ABC16079
JLOC1	JLOC1_45700.1	708	2e-21	161 - 220	97	58 / 60	minus
Harvest21	ABC16079	1011	3e-25	930 - 989	100	60 / 60	plus	ABC16079
Harvest35	U35_22261	1011	3e-25	930 - 989	100	60 / 60	plus

Contig Sequence (1011 bp)

>U35_22261 1011 Hv_44K_v2
GTATTACTAGAAGACTTGCTTGGCCCAAGTAGCTAGTATCGCTCTCTGTCTGTCATCTTC
AACAATCCAATGGGGAAACAGACAGCAGTAGCACTAGTGCTTCTCGGTGTGCTCTGTGGA
ATAGCTTCTCATGGGGTCGATGCCCAGTATTACTGGACGAGCGCCACGGCGACGTTCTAC
GGCGGCGCCGACGGCTCTGGCACCATGGGAGGCGCGTGTGGGTACGGCAACCTGTACGGC
TCCGGGTACGGGATCAACAACGCCGCGCTGAGCACGGCGCTCTTCAACGACGGCGCCATG
TGCGGGGCGTGCTACATCATCTACTGCGACACGGGCAGGAGCAAGATGTGCAGGCCGGGC
ACCCAGATCACCGTCTCCGCCACCAACTTCTGCCCGCCCAACTGGGCGCTCCCCAGCAAC
AACGGCGGGTGGTGCAACCCGCCGCGCCTCCACTTCGACATGTCGCAGCCCGCCTGGACC
AGCATCGCCATCTACCAGGCCGGCATAGTCCCGGTCATGTACAAGAGGGTCTCCTGCCAG
AAGCGCGACGGCATCCGCTTCGGCATCTCCGGGAGGGACTACTTCGAGCTGGTGGTGGTG
ACCAACGTCGGCGGCAGCGGGGTCGTGGTGCAGATGTGGATCAAGGGCTCCAACACCAAC
TGGCTCGCCATGAGCCGGAACTGGGGCGCAAACTGGCAGAGCAACGCCTACCTCAACGGC
CAGAGGCTCTCCTTCAGGGTCAGGCTCGACGACGGCCGCGAGGCCACGGCCAGCGACGTC
GCGCCGTCCAACTGGTGGTTCGGGGCCACATACAGTTCCTGGATCAACTTCTACTAGCTA
GTACCGGCCGGACCATGCGCGCATGCATCAATCAAACCGGTTCATCCACGGCACTGCTTA
ATCTATCATCATTTTACTGTAGTATATAATAGTAGTACTATTAAATCGTAAGGCGCCCTC
TGTTGCATTCGCCACAGTTGTGTTTGGCAGCCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22261 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g19600.1	249	6e-111	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi2g31760.1	255	3e-130
Arabidopsis v10	AT1G20190.1	252	6e-87	\| Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 \| expansin 11 \| chr1:6998762-6999710 REVERSE LENGTH=252