barSeed - Barley Seed Development Database

Probe CUST_17523_PI390587928

Source Contig U35_10290

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17523_PI390587928	Hv_44K_v2	TGAACTTGGTGATGCTTCTATGAAAGGGCAGTTGGTTCATGCACTGGTGAATACACTGAC	383	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.797	1.726	1.078	0.869	0.567	0.481
Raw	900.329	1239.188	732.406	849.691	214.836	197.473

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38053.1	1095	2e-24	268 - 327	100	60 / 60	plus	None
MLOC	MLOC_38053.2	931	2e-24	147 - 206	100	60 / 60	plus	None
JLOC1	JLOC1_24708.1	1233	8e-25	252 - 311	100	60 / 60	plus
Harvest35	U35_10290	469	3e-25	384 - 443	100	60 / 60	plus

Contig Sequence (469 bp)

>U35_10290 469 Hv_44K_v2
TTCATATGGGGTGAAGTTCCTGTGACCGCAGATGTGATACTAGAAACAAACTTTGTTTCC
CTTTCCCAAGCCACAAACTTTCTTACTGGTGATGCACCCCTGCTTGACTCAAGAAACTTA
GGTAAAAGAAGCAGCTGTGAAGAAGCACGTACAGCGGCTCAAGAAGAAATTATAAACAAG
TTGTTTGATACACTAATTTATAGCAGCAGAAAAGAGGAACGCTGTGCGGGTACAGTCTGT
TTGGTCTCACTCACAATGTACTGCGGTCGGCATCCGAAGATCCTTGAACTCCTTCCACAG
ATTCAGGAAGCCTTTTCTCACCTTATTGGCGATTCTAATGAGCTTACACAAGATTTGGCA
TCCCAAGGTATGAGTATTGTGTATGAACTTGGTGATGCTTCTATGAAAGGGCAGTTGGTT
CATGCACTGGTGAATACACTGACTGGCGCAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10290 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04220.1	1816	6e-79	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi4g43517.1	1760	7e-91
Arabidopsis v10	AT2G26780.1	1826	1e-57	ARM repeat superfamily protein \| chr2:11410125-11423598 FORWARD LENGTH=1826