barSeed - Barley Seed Development Database

Probe CUST_17519_PI390587928

Source Contig U35_10295

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17519_PI390587928	Hv_44K_v2	CCCCCATTATGAATCTTCTGAAACAATGGTTGTATAAATATGAACTTGTGATGCTACTAC	578	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371843	2486	2e-24	2426 - 2485	100	60 / 60	plus	ABC38783
MLOC	MLOC_39365.3	1070	2e-24	860 - 919	100	60 / 60	plus	ABC38783
MLOC	MLOC_39365.1	1581	2e-24	1371 - 1430	100	60 / 60	plus	ABC38783
MLOC	MLOC_39365.2	1813	2e-24	1665 - 1724	100	60 / 60	plus	ABC38783
JLOC1	JLOC1_25659.1	1445	8e-25	1296 - 1355	100	60 / 60	plus
Harvest21	ABC38783	620	3e-25	26 - 85	100	60 / 60	minus	ABC38783
Harvest35	U35_10295	663	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (663 bp)

>U35_10295 663 Hv_44K_v2
GGGCCAAGAAAGAACTATTCCCAAGTATCTGATTTGAGTACCGATCCAAGTAATCTGTAT
GGAGTTGCCTTAGCTCGCCCGACTGGAGAGACATCAGGAGCAAGAAACAGTCAATATCTC
CCTCATGCTGGTGACTGCACTCAGTCAGGAGGTGACGCCACACTTAGCTGTTCTTCAAGC
ACCAAAGGGTACACTGCTCTGCCGAAGAATTTGCAGCATGGCCATGTCCTAACAGGCTTG
GAAGAAACGGCCACGCATCGCCATGCGCCTCTGCCATATAGAGCTTGTCAGGGGTTGAGT
GGTGGCACTTTGGATGGAGTGACTGCCCGCTCATACCTGACCGGTCAAGATGGCATTTTG
CGCAGCAATCCGAAGTACGGATCGTCAGATTGGGAGCATGTGCTAACTGAAGAAATCGGC
TGGAGCTGAACGAATCTGATGGTACCGTCACCTGTATATGAGGAAGTAGGATTGCAGGAA
ACCAGGGATTCTGGTTACCTTTTTGTTGCTAACTAATGCTGTTGAAAACGACGTTAGTTG
GCGAAATGGTGCGTTTCTCGTCGGGCGAAAATACAGTGCCCCCATTATGAATCTTCTGAA
ACAATGGTTGTATAAATATGAACTTGTGATGCTACTACTAAGCGCTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_10295 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g16490.1	712	9e-52
Arabidopsis v10	None