barSeed - Barley Seed Development Database

Probe CUST_17509_PI390587928

Source Contig U35_22270

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17509_PI390587928	Hv_44K_v2	AGGAAGAAGAAGATCACGGTCGATGGAAGATTGACCCTTATGATGCATGCATGAGGATGA	919	GeneList: yellow MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.403	1.783	1.080	0.919	0.240	0.339
Raw	478.339	585.609	302.115	418.774	38.189	57.203

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65966.2	1493	2e-24	196 - 255	100	60 / 60	minus	None
MLOC	MLOC_65966.1	1549	2e-24	264 - 323	100	60 / 60	minus	None
JLOC1	JLOC1_43449.2	1714	8e-25	1392 - 1451	100	60 / 60	plus
JLOC1	JLOC1_43449.1	1314	8e-25	992 - 1051	100	60 / 60	plus
Harvest21	ABC16345	980	3e-25	920 - 979	100	60 / 60	plus
Harvest35	U35_22270	980	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (980 bp)

>U35_22270 980 Hv_44K_v2
GCACTTACAAGGGGGGCGGAGACGTGCAGATTAATTCTTAGCAGGTCACAGCTGGGGTTT
GGTTCCTGGAATCCTGGTTGGATCGATCGTTGCGGTTGGGGAGATGGGTCGCGGGAAAAT
CGAGATCAAGCGGATCGAGAACGCCACGAACCGGCAGGTGACCTTCTCCAAGCGCCGGGG
CGGGCTGCTCAAGAAGGCCAACGAGCTGGCCGTGCTCTGCGACGCGCGCGTCGGCGTCGT
CATCTTCTCCAGCACCGGCAGGATGTTCGAGTACTCCAGCCCCGCCTCCAGCTTGAGGGA
TCTCATTGAGCAGTACCAGAACACCACCAACAGTCAGTTCGAAGAGATTAACCACGATCA
GCAAATATTTGTGGAGATGACACGGATGAGGAACGAGATGGAGAAGCTGGAGGATGGCAT
ACGCAGGTACACCGGCGACGACCTCTCCTCCCTCTCCCTCGTCGACGTCAACGACATCGA
GCAGCAGCTCGAGTTCTCCGTCGCCAAAGTCCGTGCAAGGAAGCATCAGCTCCTGAACCA
GCAGCTCGACAATTTACGTCGCAAGGAGCATATCTTGGAAGATCAGAACAGTTTCCTGTG
CCGCATGATCAGCGAGAACCAGCATGGCGGTGATGGAAAGATGGCGGTGATGCCGCCGGT
GCTGTCGATGCTGACGCCGGCCTTCCCGGCGACGCCGTACTACACGGGCGAGGAGTCGTC
GAGCACCGCGCTGCAGCTGACGTCCCCGCAGCTTCAGCTCCACGCCGCCGAAGCCGCCGG
GTTCCGGCTGCAGCCGACGCAGCCCAACCTGCAGGACCCGGCGTGCAGCAGCCTCCACGC
CGGCCACGGCCTCCACCTCTGAGATTTGATCATCTGATCATCACGGGCGCGGTGATGGAC
ATGCTGATTCATGGATTCTAGGAAGAAGAAGATCACGGTCGATGGAAGATTGACCCTTAT
GATGCATGCATGAGGATGAC

Homology of Contig U35_22270 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07430.1	261	3e-123	protein\|OsMADS29 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi3g05260.1	266	1e-125
Arabidopsis v10	None