barSeed - Barley Seed Development Database

Probe CUST_17497_PI390587928

Source Contig U35_46230

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17497_PI390587928	Hv_44K_v2	GGTGCAGTATTCTCATACGTGCACAATATTTTTGTAGCATGTAACATAGTATCCATGCAC	51	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.081	1.713	1.792	1.092	0.291	0.358
Raw	111.772	281.461	249.390	246.165	22.489	30.242

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24602.1	2454	2e-24	2344 - 2403	100	60 / 60	plus	ABC46017
MLOC	MLOC_24602.4	1669	2e-24	1565 - 1624	100	60 / 60	plus	ABC46017
MLOC	MLOC_24602.2	2430	2e-24	2307 - 2366	100	60 / 60	plus	ABC46017
JLOC1	JLOC1_16904.1	2489	8e-25	2306 - 2365	100	60 / 60	plus
Harvest21	ABC46017	610	3e-25	52 - 111	100	60 / 60	minus	ABC46017
Harvest35	U35_46230	610	3e-25	52 - 111	100	60 / 60	minus

Contig Sequence (610 bp)

>U35_46230 610 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATTTTACCACTTTCACTTTGTATCAAAAATATTGTGCATGGA
TACTATGTTACATGCTACAAAAATATTGTGCACGTATGAGAATACTGCACCCAATATCTT
TTCTTTTTGTGGAGAATCTGCACCACTACAAAGAGAGGTGATGAAAATACTAAACCTAAC
AGTACTAAAAAAGAGAACAGAGCAAGCCTGGCTACAGTTGACATCAATGGTACCCACCTA
CCCCCATCCCCGACTAACCTCCTGAACCCATTCACTGCTGTACACAATCATGAGAAGAGC
TATCCTTGACGGGTCCACTCTGTTCTTAGCTTGGAGCAAAGTGATCTTGACATTTATGGA
ACCTTCTTTCATAATAGGATAAGAATTGCTCGGACCTAGGCATTTCGATTTATCTGCAAT
TCTTTGATAATAGGGTAAGAACTGCTCAGACCTAAGCATTTTGATTTATCTGCAATGGCG
GGAGGCCTGGAATTTCAGGAATGGGCGACTTTTTCTTCTTTATCTTATCAAACATCATTG
CTTGGGTCATTAGAATTAGCCCTGCGATAGAAGCGGAGTTCTGGAGCACGCATCTTGCAA
CCCGGCACGG

Homology of Contig U35_46230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None