barSeed - Barley Seed Development Database

Probe CUST_17490_PI390587928

Source Contig U35_46238

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17490_PI390587928	Hv_44K_v2	AAGTGAAGGCAATCAAAGAAGGCAAGGCTATTGAGAAGCCAATCTACAACCACGTCACTG	391	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58999.3	661	2e-24	518 - 577	100	60 / 60	plus	None
MLOC	MLOC_58999.1	5833	2e-24	2538 - 2597	100	60 / 60	plus	ABC34639 ABC49708
JLOC1	JLOC1_38364.1	2190	8e-25	801 - 860	100	60 / 60	plus
Harvest21	ABC46039	536	3e-25	392 - 451	100	60 / 60	plus
Harvest21	ABC00908	772	3e-25	450 - 509	100	60 / 60	plus
Harvest21	ABC00895	1614	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_46238	536	3e-25	392 - 451	100	60 / 60	plus
Harvest35	U35_14461	1682	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (536 bp)

>U35_46238 536 Hv_44K_v2
CCTCAGTTACAAGGCTTGAAGGGGAGAAGAGCAGCTCCAAGAGGTTGGGCAGCAAACATG
GCATTCTGCAGCCCACACACCACCACATCCCTGCGCTCCCCATGCACCACCATCCCAAAC
TCAGGCTTCAGGCAGAACCAAGTCATGGCGTGGTGTGACAACCAGAAGCAGCAGGAGGAG
TACCACGAGGCATGGAGCAAGGACCTTCCAGGTCTCATGCGCAGTTGAGAAGCCAATAGT
GATTGGCCTGGCAGCAGACTCGGGATGTGGGAAATCCACCTTCATGCGCCGGCTCACCAG
CGTGTTTGGAGGTGCTGCAGAGCCACCCAAGGGCGGCAACCCAGACTCGAACACGCTCAT
CAGCGACACGACTTTGATCTCATGTATGAGCAAGTGAAGGCAATCAAAGAAGGCAAGGCT
ATTGAGAAGCCAATCTACAACCACGTCACTGGCCTCCTCGACCCGGCGGAGCTCATCCAG
CCCCCCAAGATCTTCGTCATCGAGGGTTTGCACCCAATGTATGACGAACGTGTGAG

Homology of Contig U35_46238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47020.1	404	3e-62	protein\|phosphoribulokinase/Uridine kinase family protein, expressed
Brachypodium v1_2	Bradi3g52400.1	405	3e-68
Arabidopsis v10	None