- Probe CUST_17489_PI390587928
- Source Contig U35_22280
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17489_PI390587928 | Hv_44K_v2 | TCGGATCAACGAAACCTACGTGAAAATAATACATGCATCCGTCGTCTCTCTTCCAAAAAA | 369 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.901 | 6.515 | 1.549 | 0.763 | 0.901 | 0.802 |
| Raw | 66.290 | 79.616 | 16.000 | 11.416 | 2.863 | 2.809 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_37291.1 | 2534 | 6e-21 | 2271 - 2323 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_22280 | 440 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus |
Contig Sequence (440 bp)
>U35_22280 440 Hv_44K_v2 GCCTCGCCGGCTTTGACTCGTCGTGCATGGGCGCCGCCGTGAACACGGCCAGCAACAACA TCAACATGGCGCCCTGCTACGACCCACAACAACAAGGGCAGCCACAGCCGCAGCAGCAGC AGAGCAGCAACGAGCCATGGCATGGCATGGGTAGCCATAGCTAGCCATCATAACAGTTGC ATAGTCGCATCTCATCACCGCAGACGCTGAGTACTGCTTGCTGCTACCCTCTACATTCAG CAGGGGATACGTCCGTTTTGAACTGGGTAACCCCCTCTCTCTCTCTCTCTTTGATCTTGA TCTTGCAAGTTGCAAGTTAAGCAAGCTTTGGAGTTTCTTTTGGGGTAGGAGCCAACTGTA AGGTAAAGTTCGGATCAACGAAACCTACGTGAAAATAATACATGCATCCGTCGTCTCTCT TCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_22280 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |