- Probe CUST_17479_PI390587928
- Source Contig U35_34262
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17479_PI390587928 | Hv_44K_v2 | GGAGGAAAGTTAAGTAAGATGCGCGACTTCCTACCAGGCAATGAATTTCGAATTTCTGCT | 308 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.280 | 1.530 | 1.208 | 0.711 | 0.246 | 0.286 |
| Raw | 1304.913 | 2430.687 | 1693.267 | 1583.072 | 189.207 | 238.104 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10859.1 | 2776 | 7e-23 | 2627 - 2686 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_10859.2 | 2852 | 7e-23 | 2703 - 2762 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_10859.3 | 2777 | 7e-23 | 2696 - 2755 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_10859.4 | 2778 | 7e-23 | 2697 - 2756 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_10859.5 | 2775 | 7e-23 | 2694 - 2753 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_7141.1 | 3174 | 4e-23 | 2726 - 2785 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_34262 | 368 | 3e-25 | 309 - 368 | 100 | 60 / 60 | plus |
Contig Sequence (368 bp)
>U35_34262 368 Hv_44K_v2 GAGAAGGAGCTTCTTGATGCATGGGGAGGAGTGGGGCTCGGCAACTCCTTGAAGCCACAT CTCTCCAAGATCGAGAAAGACAAGGCTGCATGGAGAAAACTAGAGGAGGAACAGAAGCAG ATATGTGCTGCTAGTACAACGGAGCTGTGACTTTGCTGGGTCAGCACAGCAAGTACGTTC TATTCGCTTCCGGTCCCGGTTCTGTTCGCGTTTCACATGGAAACTCCCTTGCACAACATG GATGCCATCAGGATCTCTCTCCTCCTGTATATCGTGGTCGCAGACCAGACGTTGGAAACT TCCGTTCCGGAGGAAAGTTAAGTAAGATGCGCGACTTCCTACCAGGCAATGAATTTCGAA TTTCTGCT
Homology of Contig U35_34262 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |