barSeed - Barley Seed Development Database

Probe CUST_17468_PI390587928

Source Contig U35_22291

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17468_PI390587928	Hv_44K_v2	ATGCTCCATACAAGTTCATCAAGTCTGGGGTAACTCCCTGATCTACATTACATAAACAGA	1006	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.314	1.379	0.965	0.866	0.393	0.415
Raw	1319.770	2122.302	1346.471	1910.738	301.838	345.895

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC15762	1045	3e-25	1 - 60	100	60 / 60	minus	ABC15762
Harvest35	U35_22291	1066	3e-25	1007 - 1066	100	60 / 60	plus

Contig Sequence (1066 bp)

>U35_22291 1066 Hv_44K_v2
CGGCACGCGGGCGGGGGATCCGCCGCGTCCTCTCTGAACCCCGCCGAGGTGGCCAAGTTC
GCCGCCATCGCCGAGACCTGGTGGGATTCTCAAGGTCCATTCAAGCCATTGCATTTGATG
AATCCGACACGACTCTCTTTTATCCGCTCCACACTCTGTAGACATTTCAGGAGGGATCCA
TATTCAGCTAAGCCACTCGAAGGTCTTAAAGTTATTGATGTTGGATGTGGAGGTGGCATT
CTCTCAGAGCCTCTTGCTCGTATGGGAGCTACAGTTACTGGTATTGATGCTGTTGAGAAG
AATATAAAGATTGCGCACATTCATGCTGCATCTGATCCAACAACTGCTTCCATTGAGTAT
TGCTGCACAACCGCTGAGGATTTGGTAAAAGAGAACAAGCAATTTGATGCTGTAATTTCT
CTTGAGGTAATTGAGCACGTTGCTAATCCTTTGGAGTTCTGCGAATCTCTATCAGCTTTG
ACAGTTCCTAATGGCGCCACTGTGATTTCTACAATCAACCGGTCAATGAGAGCATATGCG
GCTGCCATTGTTGGTGCTGAGTATATTCTCAGATGGCTTCCTATAGGGACACATGAGTGG
TCCAAACTAGTCACCCCGGAGGAGCTAGTCCTAGCACTGCAAAGAGCCTCAATCTCCGTG
GAGGAAATGGCCGGGTTCGTCTACAATCCATTGACTAGAGAGTGGTCCCTGTCTGATGAT
ACTAGTATAAACTACATCGCGTACGGCATCAAGAAGAGTGAAACACCCCCAACAATGCCA
CATCAGCAAGATTAGCCAGTCGTGTTTGGAGAGGATCGTTTGTGTATCACTGTAACAAAT
TTTGGAAGCAAAACCCTTGCCACTTAAGATCATAGCAGCGGTTGCAATCAAGTAACGGTA
AAGAAGAGGCTTTGCTCCTGGAGTAGTTATGTTTTCTTTGAGAAGTTGATGGGAGAGACC
AGCTAACAAGTAGGGCTAGTTAGTTTCCACACTTTGTAATAAATGTATGCTCCATACAAG
TTCATCAAGTCTGGGGTAACTCCCTGATCTACATTACATAAACAGA

Homology of Contig U35_22291 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05900.1	328	2e-159	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g49240.1	330	3e-169
Arabidopsis v10	AT2G30920.1	322	6e-135	\| Symbols: ATCOQ3, EMB3002, COQ3 \| coenzyme Q 3 \| chr2:13157409-13159824 REVERSE LENGTH=322