barSeed - Barley Seed Development Database

Probe CUST_17427_PI390587928

Source Contig U35_46287

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17427_PI390587928	Hv_44K_v2	GCCAGCCGGCGACGTGCATGGACACTCCGTGCGCGCTCTCGTGTCTGCCTCATGCGTGCC	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376189	2875	2e-24	623 - 682	100	60 / 60	plus	ABC10807
MLOC	MLOC_16119.1	516	2e-24	261 - 320	100	60 / 60	minus	None
JLOC1	JLOC1_11084.1	439	8e-25	205 - 264	100	60 / 60	minus
Harvest21	ABC46175	300	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_46287	300	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (300 bp)

>U35_46287 300 Hv_44K_v2
GGCACGCATGAGGCAGACACGAGAGCGCGCACGGAGTGTCCATGCACGTCGCCGGCTGGC
TTCGGTCGTCGCCGCGGAGCCTTGCGCACGCCGACAGCCGGTCGCCTGGTTCAAGTGGTC
CTGGATCCTCGCTACTGCGCCTGCGCCTGGGGGGGGTGCAGCTCCACCGCGCACTGCGAC
TTGAAGAGCGGCGCCAGGGACGCCGGCTCCGGGACCGGCGACGGCATCGCCGGGTGCCGC
CACACCCCGCCCCCGTTGGAGGCAAGCGTCGGCGTCGGCGCCGGCATGGCCGGGTGCCGC

Homology of Contig U35_46287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None