barSeed - Barley Seed Development Database

Probe CUST_17422_PI390587928

Source Contig U35_46294

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17422_PI390587928	Hv_44K_v2	ACCATGATCCATCTCTTGGGAAGACGTTTGGCCAATCAAATGTGACTCCTCTGATAACTG	304	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.000	1.569	1.195	1.001	0.593	0.438
Raw	29.552	35.523	23.905	29.691	6.177	4.428

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64183.1	2715	2e-24	1075 - 1134	100	60 / 60	plus	ABC08153 ABC49770
MLOC	MLOC_64183.5	1337	2e-24	1257 - 1316	100	60 / 60	minus	ABC08153 ABC49770
MLOC	MLOC_64183.2	2777	2e-24	1560 - 1619	100	60 / 60	minus	ABC08153 ABC49770
JLOC1	JLOC1_42111.1	3032	8e-25	1276 - 1335	100	60 / 60	plus
Harvest21	ABC46195	463	3e-25	305 - 364	100	60 / 60	plus
Harvest35	U35_46294	463	3e-25	305 - 364	100	60 / 60	plus

Contig Sequence (463 bp)

>U35_46294 463 Hv_44K_v2
GCGCAGCGCGGGGACCTCGACGCCGTGCGCCAGATCATCGCCGAAATCGACGCGCAGATG
ACCGGCACCGGGGAGGAGTTCGACAGCGAGGTGGCGGAGATCCGCGCCGCCGTGCTCAAC
GAGCCCAACGAGGTCGGGGAGACCGCGCTGGTGATCGCAGCTGAGAAAGGCTTCATCGAC
GTCGTCGTCGAGCTGCTCAACCACTCTGACAAGGAGAGCCTTGCCAGGAAGAACAAATCA
GGATTCGATGCTCTGCACGTCGCTGCAAAGGAAGGCCACAGAGATATTGTGAAGGTACTC
CTCGACCATGATCCATCTCTTGGGAAGACGTTTGGCCAATCAAATGTGACTCCTCTGATA
ACTGCGGCGATTAGAGGCCACCTCGAGGTAGTGAACCTTCTGCTGGAGCGAGTTTCTGGG
TTGGTTGAACTATCAAAGGCGAACGGAAAGAATGCATTGCACT

Homology of Contig U35_46294 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17240.1	683	1e-89	protein\|ankyrin repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g66220.1	686	2e-90
Arabidopsis v10	AT3G12360.1	590	7e-60	\| Symbols: ITN1 \| Ankyrin repeat family protein \| chr3:3934146-3936495 FORWARD LENGTH=590