barSeed - Barley Seed Development Database

Probe CUST_1741_PI390587928

Source Contig U35_14019

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1741_PI390587928	Hv_44K_v2	TAAGGATTGTGCTGCTTGTTGTTCTGAAGAAATAGTGATGTCGCCGTTTGAATCAAAAAA	566	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367190	526	3e-21	473 - 526	100	54 / 54	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31617 ABC49951
MLOC	MLOC_13180.1	471	3e-21	251 - 304	100	54 / 54	plus	ABC01121 ABC01122 ABC01123 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC37479 ABC49951
JLOC1	JLOC1_8897.1	437	2e-21	251 - 304	100	54 / 54	plus
Harvest21	ABC01167	632	3e-25	561 - 620	100	60 / 60	plus	ABC01167
Harvest21	ABC01182	638	1e-23	573 - 632	98	59 / 60	plus
Harvest35	U35_14019	639	3e-25	567 - 626	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_14019 639 Hv_44K_v2
GCACGAGGTCTGCATCTCCCCTCACCTTCGATTCAAACCCAACCTCCCCGCACCCTCCAG
TCAGCACTCAGCAGCTTCCATGGCCCCCAAGGCTGCCGAGAAGAAGCCGGTGGAGAAGAC
CCCCGCGGGCAAGAAGCCCAAGGCGGAGAAGAAGGTGCCGGCGTCCAAGGAAGGCGGCGA
CAAGAAGGGGAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAA
GGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAA
CTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCCGCCAAGCTGGCGAGGTA
CAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCC
TGGCGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTC
ATCCTAGGCCTGGTCGTTGTCGTGTCTTGAATTGATTTGATGGTGGCGTTCTGTACGTAG
GTAGCAGTACGATGTTACAACCTCTGTAAGGATTGTGCTGCTTGTTGTTCTGAAGAAATA
GTGATGTCGCCGTTTGAATCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14019 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	2e-58	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00530.1	156	3e-59
Arabidopsis v10	AT5G22880.1	145	9e-58	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145