barSeed - Barley Seed Development Database

Probe CUST_17410_PI390587928

Source Contig U35_5211

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17410_PI390587928	Hv_44K_v2	GTTAGATCACCTGTTGTGGAACTGCAGTTTGCATTCTTAATTACTACTAGTACTTGGTAT	1487	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.741	1.009	1.713	1.802	0.820	0.568
Raw	370.048	812.499	1179.748	1908.407	309.469	231.618

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64744.1	2608	2e-24	1049 - 1108	100	60 / 60	minus	ABC22319
MLOC	MLOC_64744.3	1720	2e-24	113 - 172	100	60 / 60	minus	ABC22319
JLOC1	JLOC1_42544.1	2011	8e-25	404 - 463	100	60 / 60	minus
JLOC1	JLOC1_42543.1	1616	8e-25	1444 - 1503	100	60 / 60	plus
Harvest21	ABC22319	393	3e-25	30 - 89	100	60 / 60	minus	ABC22319
Harvest35	U35_5211	1602	3e-25	1488 - 1547	100	60 / 60	plus

Contig Sequence (1602 bp)

>U35_5211 1602 Hv_44K_v2
CAAATCAGCCGCCGCCGGCGCCTCACTCCCCAAACACACCACCAGACGGCCCACCTCCCT
CCCTCCCCCCCTCTCACCGCCTCCTCCTCCCCCTGCCATGGCCGACCCTGTTCCCCCGCC
TGCGAAGAGGAAGAAGGAGGGCCCGATTTGTCTGGAAACCTCGCCGCTCCTTCCGCCCGC
AGGCTGGTCCGATCTGCCGCCCGACCTCGTCCGCCGCGTCGCCGACTCCCTCCTGGCCAC
CAACGACCTCGACTGGTACATGGACTACCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCAC
CGCCGACCCCAGGAGGGCCGCCTCCGACCCCCGCTTCCGCCCGCGCTGCTGGATCGTCCT
CGAAGAGGTCTTCCTGAGCGAAGGACAAGAGATTCACCTGGTAAACACCGTCACCGGCCG
CTTCCTCCGCAAGATTCTCCCGCAGCTCGGCGATTACCACGCCGTGACCGCCACACACAG
CGGCTACTGCGTCCTGGCGGAGAAAGGCGCTCGTCACGCCGCCCGCGTCCTCAACCCCCT
CACCGGCGTCGTGATCCGTTTCGCGGCGCCCGTGCCCCTCGATGTGGGAGTCGCTGATCT
CACTTTTCCCCACGGCTCTTCGGTCCGGCTCGCCGTGTTCTGCGACTCTTCTCGCAAGGC
CTACTCAGCGGCTCCTCACAGTAAAAGGTTCGTCAGATACAAGCATAAGCAGCAATCAGC
TTTCGATTACTTCCGGAAGGCGGTCGTGGGTGGTGCCTATGCAAGCCTTTCTGAATTATC
CGTAGTTCGTGAGCTGATGATTAGCTTAGGCAAGTTTCTGAATTATCGGGTTTCGACCAA
GGTTTTCTCGGTTGATCGTCCTGGACATGGGTACGCCATTCGGTGTTTCCTAGTGGATTT
GGATGGGGATATAGGTATCGTCTTGAAGTTCTTGAATGCACATGAAGCCCATTCTCTCTT
TGCCCTCCAATTCGACACCGACACAGGCAAGCTCTGGCGTGTGAAGACCACAGGAAGATT
TGCCATCTTCATCGGTGACCACAGGTGCTTCTCCGTCGATGTTGATAAGTTCCCAGGAAC
GGAGGCAGACTGTGTGTACTACACTGAACATTTGGGTTCGTCCGCTCATATCTGCAAGTG
CAACATCAGGGACAACAAAATAGAGAGGATCTATGAGGCTACAGATTTCGTGAAGCAGGA
CAAGAAGTTTGTCCTGGTCGCCGACCGTCCTCACACCATCATCCACTTCCTCTCCAGCTA
CACCATCAACACCCCGGATTCTCAACTGGCCTTGCAACAGATTTCATAAGGCGCTGGCAC
CAGCAGATCTTCATTCAGCTCTGGGATAGTGAATTCTCGATGACCGGACGATAAGAAGGC
TATGCATTTGCTAAGTAATTCTTCATGTTGTCTTTCTAGTCTTTTGTTTCGCTACTATGG
TTATGCCTTGCCTTATGTTAAGCCTAAAACAATAGGATGATTCTAATGTTAGATCACCTG
TTGTGGAACTGCAGTTTGCATTCTTAATTACTACTAGTACTTGGTATCAACCTAATGGTA
CATCTACTGTGCTTGATGCTATCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None