- Probe CUST_17407_PI390587928
- Source Contig U35_32564
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17407_PI390587928 | Hv_44K_v2 | CTGATAAAGTTTGTATAGAGGATAAACTGGAGGCCAGTACTAGGAGTTCTTTAAGCAGCA | 365 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.933 | 1.474 | 1.779 | 1.185 | 0.909 | 0.678 |
| Raw | 36.657 | 76.098 | 94.637 | 84.149 | 26.941 | 21.939 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59401.7 | 2660 | 2e-24 | 297 - 356 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.9 | 2289 | 2e-24 | 244 - 303 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.11 | 2454 | 2e-24 | 241 - 300 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.10 | 3076 | 2e-24 | 258 - 317 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.8 | 3940 | 2e-24 | 271 - 330 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.5 | 2400 | 2e-24 | 445 - 504 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.1 | 3415 | 2e-24 | 522 - 581 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.4 | 4122 | 2e-24 | 453 - 512 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.2 | 3616 | 2e-24 | 522 - 581 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.3 | 3412 | 2e-24 | 522 - 581 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59401.6 | 3148 | 9e-22 | 328 - 389 | 97 | 60 / 62 | plus | None |
| JLOC1 | JLOC1_38657.11 | 3178 | 8e-25 | 225 - 284 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.10 | 3099 | 8e-25 | 257 - 316 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.9 | 3207 | 8e-25 | 257 - 316 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.8 | 3146 | 8e-25 | 394 - 453 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.7 | 3147 | 8e-25 | 398 - 457 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.6 | 3294 | 8e-25 | 341 - 400 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.5 | 3205 | 8e-25 | 363 - 422 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.4 | 3115 | 8e-25 | 363 - 422 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.3 | 3112 | 8e-25 | 363 - 422 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.2 | 3325 | 8e-25 | 372 - 431 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38657.1 | 3322 | 8e-25 | 372 - 431 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32564 | 482 | 3e-25 | 366 - 425 | 100 | 60 / 60 | plus |
Contig Sequence (482 bp)
>U35_32564 482 Hv_44K_v2 AGCAACAGTTCACGGGGCAGAACAGAAGGGAGCTGGGTAAATTCCGGTCCATTCCGCCAA CCTCCCTCCCGTCCCGTCCCATTCGCCGCTCCCACTGCACACTGCGACTGCTTGCGCAGT GGTACTAGCTCGCTGCTCCGCCCCCCGCCGCCGGCCAATGCTCGCCGCCGCTCCCCCGTA GGAATCCCGTATCTTTGCTGATGTTGTGATGCTTGGAGGTAGTGGTTCTAGTGAGAAGAA GACAATGATCAACTTGTTCGACCTGAGTACGGGGATGGCCAGCACGAAGGCGCTCGCTGA CAGAACTCACAGAGAAGATTCTCCTGTTCGTAGAGGCCGGACAGATATCAAGAGAACCGT TGATCCTGATAAAGTTTGTATAGAGGATAAACTGGAGGCCAGTACTAGGAGTTCTTTAAG CAGCANATCAGATGCATCACCCATGAAGAGCTACTAGCAAACGAGATAGCCAAAGAGTGG AA
Homology of Contig U35_32564 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |