barSeed - Barley Seed Development Database

Probe CUST_17403_PI390587928

Source Contig U35_32566

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17403_PI390587928	Hv_44K_v2	TTTAATTCAGGGATTTACAAGAAATTTTGGTTCTAGGTTGCCAAACGGGGAGCGCCGTGA	371	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.282	1.396	1.272	0.556	0.434	0.333
Raw	205.774	171.744	156.436	97.984	29.888	24.668

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73858.1	4942	2e-24	1633 - 1692	100	60 / 60	plus	ABC16509 ABC16521 ABC17771
MLOC	MLOC_69639.1	5134	2e-24	3089 - 3148	100	60 / 60	minus	ABC16509 ABC16521 ABC17771
JLOC1	JLOC1_49194.1	5049	8e-25	1656 - 1715	100	60 / 60	plus
JLOC1	JLOC1_46161.2	4834	8e-25	1583 - 1642	100	60 / 60	plus
JLOC1	JLOC1_46161.1	5238	8e-25	1987 - 2046	100	60 / 60	plus
Harvest35	U35_32566	452	3e-25	372 - 431	100	60 / 60	plus

Contig Sequence (452 bp)

>U35_32566 452 Hv_44K_v2
ATAAAAGGGACTCTTGTAAATCATCTACGCCCAGCACTACCAGGTTCCACTTCACCACTA
TCCCTTATGATGCGTGAACTAGGCATTCTGTTCACGGCAGAAACCCATAATTTTCCATGT
GCCGTGGCACCCTACCCAGGAGCTGAAACAGGTGCAGGTGGCCGCATAAGGGACACACAT
GCCACTGGAAAGGGCTCATTTGTTGTTGCTTCAACTGCTGGTTATTGTGTTGGAAACCTT
CAAATTGAAGAATCATATGCACCTTGGGAGGATTCATCCTTTTCATACCCATCAAACTTA
GCTTCCCCGTTGCAGATTCTTATTGATGCTAGCGACGGTGCTTCTGACTATGGGAACAAG
TTTGGCGAGCCTTTAATTCAGGGATTTACAAGAAATTTTGGTTCTAGGTTGCCAAACGGG
GAGCGCCGTGAATGGCTGAAGCCTATATGTTC

Homology of Contig U35_32566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66500.1	1420	1e-86	protein\|phosphoribosylformylglycinamidine synthase, putative, expressed
Brachypodium v1_2	Bradi3g28640.1	667	2e-95
Arabidopsis v10	AT1G74260.1	1407	2e-80	\| Symbols: PUR4 \| purine biosynthesis 4 \| chr1:27923005-27927764 REVERSE LENGTH=1407