barSeed - Barley Seed Development Database

Probe CUST_1739_PI390587928

Source Contig U35_29981

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1739_PI390587928	Hv_44K_v2	ATACCTCGGGACCGTCTTGTATTTGGCTTATTAAAAATGAAATATTCTCCTTTAAGCCAA	475	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.215	2.693	1.568	0.764	0.167	0.100
Raw	1472.943	3055.828	1430.097	1162.421	86.663	55.524

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC29591	544	3e-25	476 - 535	100	60 / 60	plus	ABC29591
Harvest35	U35_29981	544	3e-25	476 - 535	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_29981 544 Hv_44K_v2
CTCACCATCTCGTCGAAACTATGAAGGGGGGCAGCATGGTGTGCACGATTGCTCTTTTGT
TCATCGGGTGCCTAGTCATGGTTGGACAATGTCGTCCCGAGCCCGACAGTGCATACGAAG
GTGCCCATAGCAACGTGACTATGATGGTCTCATCATTAGATCAGAGAAAAATTACCTTGA
AATGGTGTATCGCAAGGGATTGTAAGACCAAACGAGAACCATCGATACTATCCCCTATAT
GCTATTGCTGCTTCAATGCGCAGGGAGCACCTTGTTTTAAATCCCTAGGGGATTGCCAGA
ATCAGTGCCCAAATTCTCTACCGGCATAATAACGGTGTGCTTTACTAGATTATAATATGA
AATTTCATATTTGAATTAAAATAATGTGATGATCGATTAAAATTGAGTGGGCCAGTATTG
AATATTAAGTTTTGTTGAGCATTAAACATCTTGATGGTGATACCGGNGGGTGGTTATACC
TCGGGACCGTCTTGTATTTGGCTTATTAAAAATGAAATATTCTCCTTTAAGCCAAAAAAA
AAAA

Homology of Contig U35_29981 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None