barSeed - Barley Seed Development Database

Probe CUST_17387_PI390587928

Source Contig U35_20590

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17387_PI390587928	Hv_44K_v2	AAGAGAAAGGACGAATTTTCTTCCACTTCCCATGTTTTGTGCATGTACCAAGAGAAAAAA	1078	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.860	1.552	0.935	0.852	0.371	0.507
Raw	586.039	500.010	270.660	392.973	59.342	87.349

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367465	1693	2e-24	1519 - 1578	100	60 / 60	plus	ABC14182 ABC14183
MLOC	MLOC_10954.1	1456	2e-24	1282 - 1341	100	60 / 60	plus	ABC14182 ABC14183
MLOC	MLOC_10954.3	1162	2e-24	1083 - 1142	100	60 / 60	plus	ABC14182 ABC14183
MLOC	MLOC_10954.2	2274	2e-24	1907 - 1966	100	60 / 60	plus	ABC14182 ABC14183
JLOC1	JLOC1_7209.1	2184	8e-25	1911 - 1970	100	60 / 60	plus
Harvest21	ABC14183	599	3e-25	79 - 138	100	60 / 60	minus	ABC14183
Harvest21	ABC14182	1177	3e-25	1079 - 1138	100	60 / 60	plus	ABC14182
Harvest35	U35_20590	1215	3e-25	1079 - 1138	100	60 / 60	plus

Contig Sequence (1215 bp)

>U35_20590 1215 Hv_44K_v2
GGCGCCGGCGAGGCCGCCCTGCTCGCGCTGCTCAACCTCGCCGTCAGGGACGAGAGGAAT
AAGATCAAGATACTGGATGCCGGTGCGCTTGACCCGCTGCTTGGTTACTTGCAGTCGAGC
GATCTTAACTTGCAGGAGTATGCAGCAGCTGCCATCCTCACTCTCTCGGCCTCGTCCACG
AATAAGCCCATCATAAGCGCGTCCGGAGCAATCCCTCTCCTTGTCAAGGTCCTGAAAGAA
GGGAATCCCCAGGCCAAGAATGATGCTGTGTTGGCTCTCTACAACCTCTCCACCATTGCA
GATAACCTTCCAACCATCCTTTCTGTCCAGCCTGTCCCCCCTTTGTTAGAGTTACTAAGG
GGTGGCAAGAGGTCCTCCAAGACAGCTGACAAGTGCTGCGCCCTTCTGGAATCGCTGCTC
GCCTTCGATCAAGGCCGGGTGGCCCTGACTTCAGAGGAAGGCGGAGTGCTCACCATCGTG
GAGGTGCTTGAGGAAGGATCCCTCCAAGGTAGAGAGCACGCCGTTGGAGCGCTCCTGACC
ATGTGCGAGAGCGACCGCAGTAAATACAGAGACTCTATCCTGAATGAAGGCGCAATCCCA
GGTCTTCTTGAGCTCACCGCCCATGGCACCCCCAAGTCCAGGGTGAAGGCGCACACCCTC
CTCGACCTGCTGCGTGACTCGCCCTACTCGAGGTCGAAGCTGCAGCCCAACACGCTCGAG
AACATCGTCAGTAACATTGCTTCTCAGATCGATGGGGAGGACCGCGGTGGCAAGGCCAAG
AAGATGCTTGCCGAGATGGTCAAGGTCAGCATGGAGCAGAGCTTGAGGCACCTCCAGCGT
CGGGCTTCTTTTGCTTGAAGTTCCTTCGACCTTCACCTGTTTTGCTTGCTTGCAACGGGA
TCGATGTAGAGAAGATAGCGAAGAAGAAGAATAACGAAGACTGAGATTGCTGGAAGATGC
CGGTCCAGGCCTTGACGGGACCGAGTGACTGGTGTAAGCGCTCCTCAAACACTCTGAAGT
TTCTTGATGATGACATACTAGGTCCTTTTTCGGACTTCGATCTTGTGTGCTGTTCCGAAA
GAGAAAGGACGAATTTTCTTCCACTTCCCATGTTTTGTGCATGTACCAAGAGAAAAAAAG
TGTAAACAAAAAAAAAGGAAAAGAGAAAAAAAAAAAGAAAGAGACACCTCCTTTGAAGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_20590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g02200.1	357	1e-155	protein\|armadillo/beta-catenin repeat family protein, putative, expressed
Brachypodium v1_2	Bradi2g01100.1	360	5e-165
Arabidopsis v10	AT3G03440.1	408	2e-108	ARM repeat superfamily protein \| chr3:815709-818568 FORWARD LENGTH=408