barSeed - Barley Seed Development Database

Probe CUST_17385_PI390587928

Source Contig U35_20592

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17385_PI390587928	Hv_44K_v2	TTATGGGAGACCAACACATGGACGTCAGAACCCTGGTCTTCATCCAATGGATATGTAACT	1055	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373676	1785	2e-24	1085 - 1144	100	60 / 60	plus	ABC17434
MLOC	MLOC_5580.2	1003	2e-24	382 - 441	100	60 / 60	minus	None
MLOC	MLOC_5580.1	1422	2e-24	658 - 717	100	60 / 60	minus	ABC17434
JLOC1	JLOC1_3596.1	1458	8e-25	647 - 706	100	60 / 60	plus
Harvest21	ABC12719	1117	3e-25	1056 - 1115	100	60 / 60	plus
Harvest35	U35_20592	1117	3e-25	1056 - 1115	100	60 / 60	plus

Contig Sequence (1117 bp)

>U35_20592 1117 Hv_44K_v2
CAGGCCTCCTCCTCCCCTCCTCCGCCTCCCCGCCAGTCTCGACAGCAACCACCGGCCGCC
TCGCTCCTGGCCACTCGCCGCGCCACTCCGCCGCCCTCTGCCCCCTGCCGTCCTCCTTCT
GTCTGCTTATCAATTGAATTTTGGACCCCATTTCGAATTGGGAAGCCGAGCGCCCCCAAG
GCCCCAACCCTAGGCAAGGGAACCCGCCGGCCGCGACGATGCCGAGCTTCCCTCCGCCGG
GCGGCGTCACCGTCTGCGAGATCAACCGCGACCTCGTTGTGGCGGACTCCCTCTCGGAGG
AACGCGCCAAGGAGGCCTACGGGGATGTCCTGGGGATGGTGTTCAGCCCAATTCCTTTCC
AGCCGGATGATCTCCTAGCGAAGCACGAGGCTCCTGCTCCAGACGAAGCTGAGCCCACTG
AGTGTATCCCCAGGACAAGTTTGGTGTCCACCATAGCCGAGTCCTTCAAGCAAATGCTCT
TCCCTTCTTGCAATCCAAAACTGCTAGAAGAATTTGATACCAAGAAAGTAAGCTGGAATC
CGCACAAACACTGTTTAGCATTTGTATCTGGGAAGGACCAGGTTACGGTCCATGACTTTG
AGGATTCAGATGGTAAAGAATCGTGCAGTCTAACAAGTGAACATCAAAAGGAAGTTAAAG
CTATTGAATGGAGGCCAAACAGCGGGAAGATGATTGCAGTTGGCTGCAAGGGAGGTATAT
GCCTCTGGTCAGCATCATATCCTGGCAATGTTGCATCCGTGAAATCTGGTGTCACTTCTT
CTTCCTTTGGTGCCTTCCCTAGAGGTTCTACTGGTCAGTGGATTCTGGTGGATGTTCTTC
GTGGTTCTTCTACTGAGCTAGTTAGTGCACTTTGCTGGAAACCTGATGGAAGATACTTGG
CCTCGGCCTCTTGTAATGGCCAGTCATTCACAATTTGGGATGTTTCTGAAGGGTTGGGAA
CTCCTATACGACGCGGATTAAGTAGCATATCGTTGGTGCGGTGGTCACCTAGTGGAGATT
ACTTTTTGACTGCTAAATTCGATGGAACTTTTCACTTATGGGAGACCAACACATGGACGT
CAGAACCCTGGTCTTCATCCAATGGATATGTAACTGG

Homology of Contig U35_20592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g03540.1	444	0.0	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g43700.1	442	0.0
Arabidopsis v10	AT3G56900.1	447	2e-109	Transducin/WD40 repeat-like superfamily protein \| chr3:21066330-21069343 FORWARD LENGTH=447