barSeed - Barley Seed Development Database

Probe CUST_17382_PI390587928

Source Contig U35_20595

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17382_PI390587928	Hv_44K_v2	CGTATATCTGCAATTTTGACTATCCTTGTGACTTTGTTATCTGCAATGCTGGTAGTAAAA	1413	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.520	1.717	1.183	0.805	0.288	0.358
Raw	329.237	567.393	345.911	360.031	47.735	62.525

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51837.1	1459	7e-23	1189 - 1245	100	57 / 57	plus	ABC24260
JLOC1	JLOC1_33143.1	1487	4e-23	1215 - 1271	100	57 / 57	plus
Harvest35	U35_20595	1486	3e-25	1414 - 1473	100	60 / 60	plus

Contig Sequence (1486 bp)

>U35_20595 1486 Hv_44K_v2
GTGCTTCTGTCATATGTTGCCGTGTGTCTCCAAGACAGAAAGCACTGGTGACCCGACTGG
TCAAAGAAGGCATTGGACAAACCACTTTAGCAATAGGTGATGGTGCAAATGATGTGGGCA
TGATTCAAGAAGCTGATATTGGTGTTGGTATAAGTGGGGTCGAAGGCATGCAGGCTGTGA
TGGCGAGTGACTTTTCTATTTCCCAATTTAGGTTCCTTGAGCGACTTCTTGTTGTACATG
GCCATTGGTGCTACAAGAGAATTGCCCAAATGATCTGTTACTTCTTTTACAAGAATATTA
CCTTTGGACTTACAATATTTTACTTCGAGGCATTCGCTGGATTTTCTGGGCAATCAGTCT
ATGATGATTGGTTTATGCTGCTTTTCAACGTTGTTCTTACCTCTCTGCCTGTTATATCAC
TTGGAGTATTTGAGCAAGATGTTTCTGCTGAAATCTGCTTGCAGTTCCCAGCGTTATATC
AGCAAGGACCAAATAACCTTTTCTTTGACTGGTACCGGATTTTAGGATGGATGGCGAATG
GCCTCTACTCATCTCTGGCGATATTCTTCCTCAACATCTGTATATTCTATGATCAAGCAA
TCCGCTCTGGTGGACAGACTGCCGACATGGCTTCAGTGGGAACCACCATGTTTTCCTGCA
TCATCTGGGCTGTCAATATACAGATTGCTCTGACAATGAGCCATTTCACCTGGATTCAAC
ATCTGTTTGTTTGGGGCAGCATAGGGACTTGGTATGTTTTCATTATCACATACGGGATGG
CTTTGAAGTCCCGAGACAACTTCCAGATTATGACAGAAGTTCTCGGGCCAGCTCCCATAT
ACTGGGCAGCAACCCTTCTGGTGACTGCTGCTTGCAACATCCCCTACCTGATTCACATAT
CCTACCAGAGATCGTGCAATCCACTTGATCACCATGTGATTCAGGAGATCAAGTACCTAC
GGAAAGACGTCGAAGACGAAACAATGTGGAAGAGGGAACGGTCCAAGGCGAGACAGAGGA
CCAAGATTGGTTTCACCGCAAGGGTAGACGCAAAGATTAAGCAGATCAAGGGGAGGTTGC
ATAAGAAAAGCCCATCGTTAACCATCCATACTGTAGCATAGAACATCTCTCGAGTCATCT
GGTAGTCTCGTCGACAGTAGTTGTCGCCTTACTTGCTCCTGCAAGGCAGCGGTTTTTGGC
TTCACCGAGTGATCAGGCGATTTTTTCTCTTTGTCCAGCCTAATTTTTTCTTTCAATTTG
TTGCTGTTCTTTTTTCTTGTCCATTTGTGTAAGAAATGTTGGGTTGTAATTGGTGGCCTT
ACCCCCCAAGTAGAAGTTCTGAAGCCAGCCGTGTAAAAAGTATAGCTCCTTTCAGTGGGA
AGAGACAAACCTACCGAGATAGCTGACAGTATACGTATATCTGCAATTTTGACTATCCTT
GTGACTTTGTTATCTGCAATGCTGGTAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g36990.1	1223	protein\|phospholipid-transporting ATPase 4, putative, expressed
Brachypodium v1_2	Bradi1g37700.1	1219
Arabidopsis v10	AT1G54280.1	1240	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein \| chr1:20262766-20267293 REVERSE LENGTH=1240