barSeed - Barley Seed Development Database

Probe CUST_17371_PI390587928

Source Contig U35_18284

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17371_PI390587928	Hv_44K_v2	TTAATGTATGCTGATGAGCGAGGGGAACTTGGATTTCGATATGATCCATTGATTTGCTTG	1289	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	17.449	6.256	1.404	0.734	0.224	0.569
Raw	5556.590	3334.635	648.262	567.479	55.035	155.206

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63510.1	2817	2e-24	2439 - 2498	100	60 / 60	plus	ABC09571
MLOC	MLOC_63510.2	2122	2e-24	1744 - 1803	100	60 / 60	plus	ABC09571
JLOC1	JLOC1_41606.1	2497	8e-25	2327 - 2386	100	60 / 60	plus
Harvest21	ABC09571	1370	3e-25	1290 - 1349	100	60 / 60	plus	ABC09571
Harvest35	U35_18284	1370	3e-25	1290 - 1349	100	60 / 60	plus

Contig Sequence (1370 bp)

>U35_18284 1370 Hv_44K_v2
GCTAAGCTCCGGCTCGGCAGCGGGGTGGTGCTCACCGGGCAGTCCTTGTACGACCTGCCC
GTCAAGGCGGAAGGGGAGAGTTTCAAACTGGTGAACAGCACCTGCACCTCCGACTCCCTC
ATCCCGGACCTGATAATGGGTCGTCTGGTGGTCTGCCTTTCCCTTGACGGTATCTCCGGC
GACGCGCTCAGAGGCGGCGCAGCTGGGCTCGTCACCATAGACCCTAAGAGCAGGGCATGG
GACAGCGCCAACGCGGCGCACTACACATTCCCTGCCCTCTTCCTCGGCCGCGCGGCGAGG
GACGTGCTGATCAACTACCTGTCGTCGACTGCCTACCCCGTCGGTCGGCTCATCTTCGAA
TGCGCGACGGTGATCGGGAAGAACAGGGCACCCAAGGTCGTGGGATTCTCCTCGCGCGGC
CCGAGCAGCGCGGCCGTCGAGCTCCTGAAGCCCGACGTGGTGGCGCCGGGGCTAAACGTC
CTTGCAGCGTGGACAGGTGATCGTTCAGGTGAGAAAGCGCACGATTTCAACATTATATCG
GGCACTTCCATGGCATGCCCGCACGTCGCAGGCGTCGCGGCTCTGCTCAAGAAGAAACAC
CCCGACTGGACGCCGGCCATGATAAGGTCGGCGTTGATGACCACGGCTAAGACCGTCGAC
AACACCGGGGCCCCCATTGTCGACGACGGAGCCGACGACGCCAGCGCCGCGACGCCGCTC
GTGGCAGGGGCCGGGATGGTCCTTCCGCAGAGCGCGATGCATCCGGGCCTGGTGTACGAC
GCCGGCACGCAGGAGTACGTCGACTTTCTCTGCACCCTCAACTACACGGCCGAGCAGATG
CGTCGGTTCGTTCCTGAACGGACGACCAACTGCACGTCGACTCTGCACCTGCACGGCGGC
GTGAGCAACCTCAACTACCCTTCTCTGGTGGTGCTCTTCGGCAGCCGCACACGCATCCGC
ACGCTGACGCGGACGGTGACCAAGGTGTCCGAGCAGCCATCCGAGACATACAAGGTGTCT
GTCACGGCGCCGGAGGGCGTCAAGGTAACCGTGACGCCGGAGACTCTGGTGTTCAAGCAG
CAGAGGGGGAAGATGAGCTATAGAGTCGACTGCCTCAGCGACGTGCTGAAGCCGGCCGGG
GCATGGGAATTCGGTTCCATCGCATGGAAAAGCGTTCACCACAAGGTGACCAGCCCCATC
GCCTTCACCTGGGGCAACTGATCAATGTCCTAGTAGATCCATTCTCTTAGTAGAACCGAA
ATTTCCATGCATGCCACTGGAACCGTTTGTTAATGTATGCTGATGAGCGAGGGGAACTTG
GATTTCGATATGATCCATTGATTTGCTTGTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18284 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g39020.1	771	1e-118	protein\|OsSub53 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi1g75550.1	818	5e-75
Arabidopsis v10	AT5G67360.1	757	1e-76	\| Symbols: ARA12 \| Subtilase family protein \| chr5:26872192-26874465 REVERSE LENGTH=757