barSeed - Barley Seed Development Database

Probe CUST_17370_PI390587928

Source Contig U35_18285

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17370_PI390587928	Hv_44K_v2	TAGCACTGTAGTACTAAAGTACCACGTTGACAGAAATTGTGTACTATTTGTTGCTCAAAC	1125	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.928	3.957	1.366	0.659	0.339	0.355
Raw	130.091	197.092	60.357	44.984	8.094	9.709

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38431.1	1346	2e-24	30 - 89	100	60 / 60	minus	ABC10439 ABC40056
JLOC1	JLOC1_24988.1	881	8e-25	781 - 840	100	60 / 60	plus
Harvest21	ABC10439	1198	1e-24	1126 - 1184	100	59 / 59	plus	ABC10439
Harvest35	U35_18285	1213	3e-25	1126 - 1185	100	60 / 60	plus

Contig Sequence (1213 bp)

>U35_18285 1213 Hv_44K_v2
GGCTGGCGCACGGGTAGGTAGCCAAGCCAAGCCGCCGAGACCGAGCTGCTCCTGCTCCTG
CTCTCGCCGCAACCAACCAACCTTCCGCTTCCGCACTCGCACTCGCACGGCTGGAAGCGG
AACGGAACCCCCGGTCCTTTTCTACTCCCCTCCCTCCTCCTCCTCCTCCTCCAGAACCCA
GGCCTCTGACCTCTCCCCCCTCCCACCGCTCGCACGTACAGCGCGCATTCCTCCGCAGGG
TCAACCCCGGCGGCCGGCCAACCATGGAGGCCGCGGCACTCCGCCCCTTCGCCGCGCCGC
TCGGGCCCGCGAGGAGGGCGGGCGTAGGCTGGCGGTGCGCGCCGGGCCAGCGGCGGCTTG
GGAGGGGCGCGCGCGTGGTGGCGAGGCTGGACGGGGGCGTGGGGAAGGGGGTGCCCACCA
CCAACTACGTCGTGCCGCTCGACAAGGCCACCGGGATGACCCGCCCGCTCGTCGAGATCC
TCAGGGACCTCAACAAGCGCGTCCCCGACAAGATCATCGACCCCGACACCAACACCGTCC
CATGGTACCATGCCAACAGAATGCTGAGCTTTTATGCACCAGGTTGGTGTGGTGAAGTTC
GTGATGTTATTTATTCCAACAGTGGAACTGTGACTGTGGTCTATCGAGTGATTCTGAAAG
GAACGGATGGAGAGGCTTTCAGAGACGCGACGGGCACGGCAAAGGTGCACCAGGGACGCA
ACGATGACGCTGTTGCGGCTGCAGAGGAGGCAGCATTCAGCAAGGCCTGTGCGCGGTTTG
GTTTCGGCCTGTACCTGTACCACCAGGATGAGATCCCATAGGGTGATAGGGGGGACGGCA
CACTTTGAGATTCATTCTGCAATGGAGCTGGTCAACGTGGGTAGGCACACCCTTGGAGAG
TTGGAAATGCTGCGCTGGTGCTTAATGCTTGTGCAAGAAGCATGTAAATTGTTCCTTCTG
TTACTTCTTTTTTGTTGTTGTTGTCGGTGTAGCCTTGCAAGATTCATCCAGCTAGAGAAA
GTAAAAGAACATATGGAATAACGTGATGTTACTTCTGTGCTGTATTTTCTGCATCACGTA
GTTTCTCAATTTTGTTTTGTTTTCTGTTGCAGCACTTATGATCAGTAGCACTGTAGTACT
AAAGTACCACGTTGACAGAAATTGTGTACTATTTGTTGCTCAAACTTTTTTACATACATA
AACAAAACTTTTT

Homology of Contig U35_18285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33790.1	187	9e-83	protein\|snRK1-interacting protein 1, putative, expressed
Brachypodium v1_2	Bradi4g34970.1	194	3e-82
Arabidopsis v10	None