- Probe CUST_1736_PI390587928
- Source Contig U35_29984
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1736_PI390587928 | Hv_44K_v2 | ATACAAAAGAATGGTGTGAAGGGCTTGAAGATGGATGCACCGAATCCAAGTGCAAGGGTT | 132 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.800 | 2.568 | 2.861 | 1.471 | 0.325 | 0.115 |
| Raw | 770.511 | 3967.601 | 3756.367 | 3208.770 | 234.042 | 89.979 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_78014.1 | 341 | 3e-21 | 157 - 213 | 98 | 56 / 57 | plus | ABC02227 |
| JLOC1 | JLOC1_52000.1 | 404 | 2e-21 | 156 - 212 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC29595 | 283 | 3e-25 | 133 - 192 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29984 | 283 | 3e-25 | 133 - 192 | 100 | 60 / 60 | plus |
Contig Sequence (283 bp)
>U35_29984 283 Hv_44K_v2 AAAGAAGAGAGGATATCAGTACATAGCTAGCACTGTGTCTTGTGATGGCGGTTAGTAAAA CAAAGGCATGCTTTGTATGCTTGGCAGCCCTTATGGTGGTGATGGCTACTGTGATGTTGT CCTGTGATGCTGATACAAAAGAATGGTGTGAAGGGCTTGAAGATGGATGCACCGAATCCA AGTGCAAGGGTTGGTGTGCAAGCAGGGGTTACACCAAGGGATTTCATTGCCGGGACGCTG ACGATTGTTGTTGTAGGAGGACTGCCACCAAGCCCATGGTGGA
Homology of Contig U35_29984 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |