barSeed - Barley Seed Development Database

Probe CUST_17369_PI390587928

Source Contig U35_18286

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17369_PI390587928	Hv_44K_v2	TGACTACGACACGGTCATGTGAATCACCCGTGTGAACTTTGCTTTAATCCCGTTAAAAAA	1327	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.316	4.322	1.123	0.665	0.365	0.380
Raw	100.594	133.572	29.070	29.492	2.985	4.639

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_18286	1398	3e-25	1328 - 1387	100	60 / 60	plus

Contig Sequence (1398 bp)

>U35_18286 1398 Hv_44K_v2
GGCGCTGCTGAGCCCGCGTGTTCCGCGGCTGCCGCTCGCCGCTCACTGCGCCGGCGCCGG
CGCCGGCATCCTCCGGTGCTGCGGCCGGCTTGCTGCCTCCGCTGCGCGATGCCAAGTTAC
GGCGTCGGGAAGCGTGGCGGCGGGCTCCTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTG
GGGCAGCGCCAAACTGCAGGGAGCCCGCGAGGAGATGGAGGACGAGGTCGTCCTCCGCCC
CGAGTCCCTCCTCCACGGCTTCTCATTCGCCGCCGTCCTCGACGGCCACGCCGGTTTCTC
CACCGTCCAGTTTCTCAGGGACGAGCTGTTCAAGGAATGCGCGGCCGCGTTGGACGGTGG
CGCGGTGCTTAACACCAAGAATCTCGAGGCCATCACGGACTCGATCAGGCGTGCCTTTGC
CACCGTGGACGCCAACCTCTCCACCTGGCTTCAGCAAATGGATAAGGAAGACGACTCTGG
TGCTACTGCCACTGCCCTTTTTCTGAGGAATGATGTCCTTGTTGTCTCGCACATTGGTGA
CTCTTGCCTGGTCATATCACGTGGTGGAAGACCTCAGTCTCTGACCAATTTTCATCGACC
ATACGGGAACAACAAAACATCCCTTGAAGAGGTCAAGCGGATTAGGGCAGCAGGTGGATG
GATTCATGATGGACGCATATGTGGAGACATTTCTGTATCTCGTGCTTTTGGAGACATAAG
ATTTAAGACACGGAAGAATGAGATGCTAGTGAAAGGAGTTAAAGAAGGAAGATGGACTGA
AAAGTTCGTTTCACGAATAAAATTTAATGGGGATCTAATAATCTCTTCACCTGACGTATC
TCTGGTAGAGCTTGGACCGGATGCGGAATTTGTTTTGGTAGCAACTGATGGTCTTTGGGA
TTACATTAAAAGCACTGAAGCTGTAGCTTTTGTCAGAGATCAACTACGTCAACATGGAGA
TGTCCAGCGGGCTTGTGAGGCGCTTGGGGAGAAAGCTCTGGATCGGCGGTCACAAGACAA
TATTAGCATAGTCATAGCTGACTTGGGAAGGACAAACTGGCAGGAGTTGGCCGTTCCAAG
GCCAAACGTGTTGTTGGAGCTAAGTCAAGCAATTGCGACTGTAGGGGCTGTATCAGTAGG
AATTTGGATTTCATGGCTTCTCACTTTGCAATAGGCCTAGTTAAGGTCGGGTGTGCACAT
CTTCACATCTTCGGCTCCAGTTGCAAATATGTATGTACTACTGTATATCCTTATAGGTAA
TTAGTTTCCTGATTAAACTGTTGAGTAGCATCTGGACTGAAAAGAAGAACAAAACTTGTG
CTCCAGCTGACTACGACACGGTCATGTGAATCACCCGTGTGAACTTTGCTTTAATCCCGT
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_18286 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g37130.2	389	0.0	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi2g40950.5	390	0.0
Arabidopsis v10	AT4G27800.1	388	6e-142	\| Symbols: TAP38, PPH1 \| thylakoid-associated phosphatase 38 \| chr4:13852013-13854091 REVERSE LENGTH=388