barSeed - Barley Seed Development Database

Probe CUST_17364_PI390587928

Source Contig U35_18289

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17364_PI390587928	Hv_44K_v2	GCCTTTTCTTGTGTTATATGTAGGCTGGGCTGGGCTGGGCTTGTTTCTTTTTCTAAAAAA	532	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.604	1.735	1.154	0.638	0.581	0.765
Raw	867.714	812.394	515.742	373.737	141.325	208.101

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC09219	1289	3e-25	1219 - 1278	100	60 / 60	plus	ABC09219
Harvest35	U35_18289	603	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_18289 603 Hv_44K_v2
CGAGTACCGCCCCAAGGAGTGCCTCGCCATGCTCGACAGGTGGACCTCGGCCGACGGCAG
GCTTTGATTTGACGAGCCTCCGACTCATCGCTCCTACGTACGGTTATGCGGTGCCTACGA
GTGAAAATTAGTGTACTGGATTTGGACCACGGCTAGCTGGTCAGGTCATTTCATGTACGG
TGTAGTACTATCGATTGCAGTGCCATGCACACCAGAGGAGGAAGAAATAAAAGTCGGGAA
AAAACTGGAGAGTTCCATGGAGTATAGGGTCGAGACCACCGAGCAAGCCATACCACGTAC
GTCTGCATGCAGTCCAGTTAGCGGAAACAGACGAATCATGAGCCGAAAGAATGAGCAAGC
CCATTCCCTTCCTCTCGTATGTACTTCTGTTCCCGTGACCGAGTAAACTGGGATGACATT
GCAGATTGGCAGTGCTTAGAATTCATCTATATGAGATGTAATTTGGTCTTATTCACTTTG
TTTTCCTATATACATCACTAATATGGTCTGTCATTGTATTTTCGCTTGTGCTGCCTTTTC
TTGTGTTATATGTAGGCTGGGCTGGGCTGGGCTTGTTTCTTTTTCTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_18289 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None