barSeed - Barley Seed Development Database

Probe CUST_17361_PI390587928

Source Contig U35_44555

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17361_PI390587928	Hv_44K_v2	GGGAGCTCATTGTTTACTTAACATAATTCCCTTTCTGGTTGTTGAATTTGTTCATCAAGT	60	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.366	0.744	0.820	1.825	1.274	2.065
Raw	11.101	37.238	34.106	118.505	30.358	53.076

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365090	2301	2e-24	2226 - 2285	100	60 / 60	plus	ABC42436
MLOC	MLOC_68036.2	3045	2e-24	1143 - 1202	100	60 / 60	minus	ABC18979 ABC42436
MLOC	MLOC_68036.1	4051	2e-24	2203 - 2262	100	60 / 60	minus	ABC18979 ABC42436
MLOC	MLOC_68035.2	2142	2e-24	1267 - 1326	100	60 / 60	minus	ABC18979 ABC42436
JLOC1	JLOC1_44976.1	2440	8e-25	1658 - 1717	100	60 / 60	plus
Harvest21	ABC42436	516	3e-25	61 - 120	100	60 / 60	minus	ABC42436
Harvest35	U35_44555	516	3e-25	61 - 120	100	60 / 60	minus

Contig Sequence (516 bp)

>U35_44555 516 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATAAAATGAAACATATTTATCAGTTTGCTCAAAGTAAACACT
ACTTGATGAACAAATTCAACAACCAGAAAGGGAATTATGTTAAGTAAACAATGAGCTCCC
GAACACGGGCATTTCAGAAGCAACTAGCCACTAGCTCCTGCTGGTATTCAGTGATGGCAC
CAGCCTCGCCAGACACCTCATCTACAAGAAAATCTTTCTCACCTCATCTACAAGTAAATC
TTTCTCAGGAAATAAGGGAGGAAAAGCGACCAGGCGATGGCAACTTCATTTTGCAGAAGC
TCATGTCAAGCTCACCATAGCTCCGACCGCCGTCCTCAGGCGTGAAGAACACCTTCCTTG
TCGCAACCCGGTCGCCACCAGCTGCTCCGAACTTTCAATAGAAACATGTCGTGAGAGCTT
GATCGCGTCATTGGCAGCAACAAGACTATCCATGCTGGCGCTATAGGCAGTGAATCGGCA
TTTGAACCCTTCTGGCGGCGATCGTAGCCTTGATGG

Homology of Contig U35_44555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None