barSeed - Barley Seed Development Database

Probe CUST_1735_PI390587928

Source Contig U35_29985

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1735_PI390587928	Hv_44K_v2	CCCCTTCCTCTCCGGCCTCTGCGCCGCCGCGCTCCGCCGCAAGCCCATCTCCGCGCGCGC	172	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51108.2	2174	2e-24	201 - 260	100	60 / 60	plus	ABC13373
MLOC	MLOC_51108.3	2110	2e-24	188 - 247	100	60 / 60	plus	ABC13373
MLOC	MLOC_51108.4	2007	2e-24	188 - 247	100	60 / 60	plus	ABC13373
MLOC	MLOC_51108.1	2274	2e-24	227 - 286	100	60 / 60	plus	ABC13373
JLOC1	JLOC1_32620.2	1919	8e-25	201 - 260	100	60 / 60	plus
JLOC1	JLOC1_32620.1	2200	8e-25	201 - 260	100	60 / 60	plus
Harvest21	ABC29596	232	3e-25	173 - 232	100	60 / 60	plus
Harvest35	U35_29985	232	3e-25	173 - 232	100	60 / 60	plus

Contig Sequence (232 bp)

>U35_29985 232 Hv_44K_v2
CGGGGCCACGCCTATCCATGACGCAAGGGCCGACGTCACTCCTCCCGGTCTGGGCGCGGA
CGACTGCTCGAAGGCCCAGTACTCGACGCCAGTCGCTCCACGCCACCACCGCAGACGCCA
TGGAGGGAGAAGACGCACACCACAGGCCCTCTTCCTCCTCCTCGTCCGGCCGCCCCTTCC
TCTCCGGCCTCTGCGCCGCCGCGCTCCGCCGCAAGCCCATCTCCGCGCGCGC

Homology of Contig U35_29985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None