barSeed - Barley Seed Development Database

Probe CUST_1734_PI390587928

Source Contig U35_29986

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1734_PI390587928	Hv_44K_v2	ATTAATGTAAGCCGCTATGTCCATCTATCCATGGTGTAATAAAGGAGTAGATCTTGATGG	369	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59392.2	484	7e-23	409 - 468	98	59 / 60	plus	ABC15989 ABC29597
MLOC	MLOC_59392.1	579	7e-23	491 - 550	98	59 / 60	plus	ABC29597
JLOC1	JLOC1_38651.1	458	4e-23	397 - 456	98	59 / 60	plus
Harvest21	ABC29597	456	3e-25	370 - 429	100	60 / 60	plus	ABC29597
Harvest35	U35_29986	456	3e-25	370 - 429	100	60 / 60	plus

Contig Sequence (456 bp)

>U35_29986 456 Hv_44K_v2
ATCGATCGCAATGGCATTGTGCATGAAGAACATCGGCAAAAGACTGTTGGGAGACAACAA
GGTGTTGATATGCTTGTGGGCCTTTTGGCTGGTGACGCTGCTTGTCTTGTCATCTGAAGA
GATGGGATCCGATGCCTGTGAGAAACAGATTAGCCAGACATGGTACAACACAACATGTAT
CATTCGCGGCACCTGTAACAAGTACTGCAGAAACGAGAACTTCGACAGCGGCATCTGCAA
GGAACTTAATTACTGCTTTTGCTACAGGAACTGCACCGCTGGATCCATCTAGCCATATAT
GTGCCATCTTCATGCATGCTCGATCCAAGCTATTGCTAGGAGTTCATGCATTATGTATGA
AATTTGTTAATTAATGTAAGCCGCTATGTCCATCTATCCATGGTGTAATAAAGGAGTAGA
TCTTGATGGGGCAAAANANAAAAAAAAAAAAAAAAA

Homology of Contig U35_29986 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None