barSeed - Barley Seed Development Database

Probe CUST_17345_PI390587928

Source Contig U35_18297

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17345_PI390587928	Hv_44K_v2	TGTGTACATTGAATTTGTACGTCGGCAACATGAATGCAACTTGCAAAATTCATTTGTGTC	1496	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.234	1.554	1.370	0.933	0.386	0.347
Raw	1104.022	2122.110	1656.137	1718.166	262.359	253.441

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6887.2	888	2e-24	774 - 833	100	60 / 60	plus	ABC08588
MLOC	MLOC_6887.1	1866	2e-24	1797 - 1856	100	60 / 60	plus	ABC08588
JLOC1	JLOC1_4521.2	1864	8e-25	1715 - 1774	100	60 / 60	plus
JLOC1	JLOC1_4521.1	1944	8e-25	1795 - 1854	100	60 / 60	plus
Harvest21	ABC08588	1585	3e-25	1497 - 1556	100	60 / 60	plus	ABC08588
Harvest35	U35_18297	1585	3e-25	1497 - 1556	100	60 / 60	plus

Contig Sequence (1585 bp)

>U35_18297 1585 Hv_44K_v2
ATCCCCTTTCGTCTCCCCCTCACCCACTCCTGCTTCTTCTTCTCTCCCTAATTTCCCCTT
GTAGCTATCGATCGATCCTTCCAGGTTGCGGTCATTACAGGCCGTGATACGGGGAGGTCC
TGGCTGGATCTCGGTCGGTGTCCGGCGCGGATCTGATACGCGGGGATGGAGGGCGAGTGC
GAGGAAGGTGCGGCAGCTAATGGACTTGGAGGGGAATGTGCTGAACGGCAAGGTGGTGTC
AGCCTCGGCGGCACCGCGGGGGAAGAAGCCCGGTCTGTCGCAAAGCGCCTCCTTCCCGGC
GAGAGGGACCACCGGCATCAAGAAGGGTGGCGCTATGACCTCCCTGGCAAAGCAAGCCAA
GCCAGAGGGGAAGGGTGCCGTGCCAAATGGAACTGCAGCGTCCTCTGGACGGGGCATGGA
GAAGAAGGCGAATTTGGCTCAGATGCCTCCCGCTCATCAATCCATGCCTGTGAAGCCTGA
ATCGGTTGATTCAACTCCAAATGATACTTCTTCTGACGTCCAAGAGTCAAATGAGAACAC
TGCCAAACCTTACAGACAGTCCTTTCCAGCGGAAATGGAGGACGATGTGCACTCCACTAC
ATCGAGCACCAATACTCAACGCAAGAATGCTGCTGTCTCTGGTTTTAGTTTCCGACTTGA
GGAGCGTGCTGAGAAGCGCAAAGAGTTCTTAAAAAAGCTTGAGGAGAAAATTCATGCCAA
GGAGATTGAACAAACGAATTTGCAGGAAAAATCTAAGGAGAGCCAAGAGGCCGAGATTAA
AAGGCTTAGGAAGAGCCTGACATTTAAAGCAGCACCCATGCCAAGCTTCTATAAGGAGCA
ACCTCCTAAAGTTGAGTTGAAAAAGATTGCACCAACACGTGCTAGGTCACCGAAGCTTGG
CCGACACAAGCCAACCAGTTCTACTGCTGCTTCTGTAGATGGCTCTGTCTCATGTGAGAG
CCTACGGCGCACAACTAATCCAGCCAAGGTAAACAGAGGTGTGGAAAATAATAAACCTAG
GGTTACTGTCCAGAGATTGGTCACAAAAGTTCCCTCCCTAGCATCTACCACTGCAAAGGC
GGAAACGCGACCTGTCGCTACAAAACAGAAAACCTCCAAGACAAAACCAAAAGTTTCAAG
AGAAAAGGTACAGCAGCTGCAAGAGAACCCAGTAGAACCCCCCCCCTGCTGAACTTTCTG
CCTTGGAAGCCCTTGCTGCTGAACCAAGTGTTGAAGATGAGACAGGACTCGGCTCGACTG
CCCCTCCGGTCACTTCAAATGAAGTACTGGTCCATGGCTGATCTATTGCTCATTTTTTTA
TTTTTGTCCTTGCAGTCTGTGAATAGTGAGGTGTGTGCTTCATGGAAAGTTGAATTGCTC
AAAGTATCGTGGAATTATTATTTCTTTGGTAGCTATATTTTTTTCCTTCAGCTTGTCCTT
GAGCATGCGGTGTATATTGTTTGATAATTTCTTCATGTTTAAACTTTTTGAGTTCTTGTG
TACATTGAATTTGTACGTCGGCAACATGAATGCAACTTGCAAAATTCATTTGTGTCAAAA
AAAAAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18297 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g36340.1	431	9e-121	protein\|lymphoid organ expressed yellow head virus receptor protein, putative, expressed
Brachypodium v1_2	Bradi4g16050.1	457	1e-144
Arabidopsis v10	None