barSeed - Barley Seed Development Database

Probe CUST_17344_PI390587928

Source Contig U35_44560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17344_PI390587928	Hv_44K_v2	TTACGCTTCATAGTACTCCCTCTGTTTACCACTTAAAAAGAAGTACTCCCTCTGTTTTTT	50	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59568.2	1245	2e-24	1055 - 1114	100	60 / 60	plus	ABC04526 ABC04527 ABC04529 ABC42451
MLOC	MLOC_59568.1	1631	2e-24	1406 - 1465	100	60 / 60	plus	ABC04526 ABC04527 ABC04529 ABC42451
JLOC1	JLOC1_38772.1	782	8e-25	647 - 706	100	60 / 60	plus
Harvest21	ABC42451	418	3e-25	51 - 110	100	60 / 60	minus	ABC42451
Harvest35	U35_44560	418	3e-25	51 - 110	100	60 / 60	minus

Contig Sequence (418 bp)

>U35_44560 418 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCATAGCGTTGTTCAAATATTATATCCAGACTAAAAAAACAGA
GGGAGTACTTCTTTTTAAGTGGTAAACAGAGGGAGTACTATGAAGCGTAACAGGTTGTCC
AACTGCAACGGCGAAAAACGAACGTGTCCAATTGGTCCAAGGCAGAACACTTGATCGCAT
CAAAAACCTGTCAACGTCACGGGGCCGGCATTTTCGGCACCTTGCCGACCGTGAACCCGC
CGTCGACGACGAAGGTATGCCCGTTCACGTACCCGGCCTCGTCGGACGCCAAGTACACTG
CCGCGCGGGCGACGTCCTCCGCCGCGAGCGCCGGGCCGTCCATCTCATTCATGTCCCTCT
CCACGATCCGCCTGCGCTCCTTGGCGCTCGTCCCGGGGTAGGACTCGGCTATGTACCG

Homology of Contig U35_44560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None