barSeed - Barley Seed Development Database

Probe CUST_17343_PI390587928

Source Contig U35_18298

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17343_PI390587928	Hv_44K_v2	TAGCTATCGATCGATCCTTCCAGGTTGCGGTCATTACAGGCCGTGATACGGGGAGGTCCT	103	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6887.1	1866	2e-24	162 - 221	100	60 / 60	plus	ABC08588
JLOC1	JLOC1_4521.2	1864	8e-25	76 - 135	100	60 / 60	plus
JLOC1	JLOC1_4521.1	1944	8e-25	160 - 219	100	60 / 60	plus
Harvest21	ABC08589	634	3e-25	104 - 163	100	60 / 60	plus
Harvest21	ABC08588	1585	3e-25	62 - 121	100	60 / 60	plus	ABC08588
Harvest35	U35_18298	634	3e-25	104 - 163	100	60 / 60	plus
Harvest35	U35_18297	1585	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_18298 634 Hv_44K_v2
GTCCCCCGGNGCTGCAGGAATTGGCACGAGGTGAACCTGCTCATCCCCTTTCGTCTCCCC
CTCACCCACTCCTGCTTCTTCTTCTCTCCCTAATTTCCCCTTGTAGCTATCGATCGATCC
TTCCAGGTTGCGGTCATTACAGGCCGTGATACGGGGAGGTCCTGGCTGGATCTCGGTCGG
TGTCCGGCGCGGATCTGATACGCGGGGATGGAGGGCGAGTGCGAGGAAGGTGCGGCAGCT
AATGGACTTGGAGGGGAGGACAACATCGTCGTCAAGGCCCGCAAGGAGGACGTCGCCGTG
GCCGCGCCGGTGGATGTGGATGGTGGTGATCACGTGGATCTCGCTGACGGGGATGCGGTG
GTTGGATCTGCAACCGCTGTGGCGGCTCCCGAAGAGCCGGCCAGGGCGCCTACCAAGAAG
GTTGGATCTGCGGACGCGGGCGGGAGGAAGAAGGGGAATGTGCTGAACGGCAAGGTGGTG
TCAGCCTCGGCGGCACCGCGGGGGAAGAAGCCCGGTCTGTCGCAAAGCGCCTCCTTCCCG
GCGAGAGGGACCACCGGCATCAAGAAGGGTGGCGCTATGACCTCCCTGGCAAAGCAAGCC
AAGCCAGAGGGGAAGGGTGCCGTGCCAAATGGAA

Homology of Contig U35_18298 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None