- Probe CUST_17338_PI390587928
- Source Contig U35_32591
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17338_PI390587928 | Hv_44K_v2 | AGAGACGACAAAGGGTCTTCGTATAGGGACAAGCCGAGCAGTATAAATGTCTCTGATAAG | 473 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.481 | 1.171 | 1.370 | 0.752 | 0.444 | 0.467 |
| Raw | 31.544 | 36.967 | 39.114 | 33.847 | 6.894 | 7.503 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365334 | 3204 | 7e-23 | 1150 - 1209 | 98 | 59 / 60 | plus | ABC13959 |
| MLOC | MLOC_78552.1 | 1569 | 7e-23 | 1217 - 1276 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_52355.1 | 2008 | 4e-23 | 1273 - 1332 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_32591 | 534 | 3e-25 | 474 - 533 | 100 | 60 / 60 | plus |
Contig Sequence (534 bp)
>U35_32591 534 Hv_44K_v2 TAAACCAAAAAATGAGAGAAAGGGAACCAGGACGAGCAGATAACGCCGCGAGAGATTCAA ACGCAGAAATCAGGAGAACAGCAGCGCAATAAACAATGCCGGTATCCGCGGGGCGGGGTC CCAAACCAAACCTTTTAGAAAACAGAATCCTACGCCGACCATAACTCCTTTCCGCATCTC GCCAACTAATTAATCGCTGGACGAGCCGCGGCGGCCGCTCGAGGATCCAAGAGAATTCCA CACACTTACCAGCTACAAGTCCATATAAGAGGGGCCTACGGGTCCAAACCAACGCAAAAT TTCCCAACACCGACAAGAGGTACCTGGAAGGAAGGAACCCGTCGGACACGAGATCAAGGG ACTCTCCAAATATTATTAGGGACAAAGCACCAGCAAACACAACGACAAACTTTTTGGAAG CTGAAGAGAGGACTTCATCGTTTCAATTTTCTGCAGACAAGACAATGGGTAAAAGAGACG ACAAAGGGTCTTCGTATAGGGACAAGCCGAGCAGTATAAATGTCTCTGATAAGC
Homology of Contig U35_32591 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |