- Probe CUST_17336_PI390587928
- Source Contig U35_32594
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17336_PI390587928 | Hv_44K_v2 | ATGCTCTTCAGCAGGGTGACTCTACTGTTGATGACTTCTATGCACAGAGTTCTGCTATCT | 252 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.628 | 1.428 | 1.647 | 0.892 | 0.459 | 0.235 |
| Raw | 41.957 | 48.123 | 59.168 | 47.120 | 8.500 | 2.749 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK370358 | 2605 | 7e-23 | 1070 - 1129 | 98 | 59 / 60 | plus | ABC03605 ABC18190 ABC37351 ABC44620 |
| JLOC1 | JLOC1_21815.1 | 131 | 4e-23 | 54 - 113 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_21498.1 | 222 | 4e-23 | 151 - 210 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_20953.1 | 415 | 4e-23 | 19 - 78 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_32363.1 | 439 | 2e-21 | 285 - 344 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_32594 | 471 | 3e-25 | 253 - 312 | 100 | 60 / 60 | plus |
Contig Sequence (471 bp)
>U35_32594 471 Hv_44K_v2 CTCGAGGGCGCTTTAAGCTTATGATGAGAAGGTCTGGCTTATGAGAGGCTCTTCAGCTGT ATCAGGGCTCTGTCCGTTTATACCCAGTGGCTTGACGATGCTCGTGCTGCCGCTGTTCTC ACGCTAGTGTCCTGCCTCAGTTTGCTTCTGAGTTTCTGGGCCTTCCTACTGTATTTGAGA TGTGGACCCGCCTTCGTCAGCGCTATGAGCCCTCTGGTGATGCCTTATACCTCTCTGTGA TCCGTCAGGAGCATGCTCTTCAGCAGGGTGACTCTACTGTTGATGACTTCTATGCACAGA GTTCTGCTATCTGGCGCCAGCTTGATTCTCTCCGCAGTGCTGGTTGTCGTACTTGCCCCT GTTGCCAGGCTGTCCAGGCCGACTTAGGCCGACTTGGAGTTTCATCGCGTCTACGAGTTC CTGTCTCGGCTCCGTAAGGAGTTTGAGCCCCGGCGTGCTCAGTTGTTTGCT
Homology of Contig U35_32594 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |