barSeed - Barley Seed Development Database

Probe CUST_17324_PI390587928

Source Contig U35_44590

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17324_PI390587928	Hv_44K_v2	CATGAGGATGAATACACTTCAAATTCTATGATGAACAAGATTTCCCGACTTGCCTGTATT	441	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51331.1	3492	7e-23	2452 - 2511	98	59 / 60	minus	None
MLOC	MLOC_51331.3	3071	7e-23	2347 - 2406	98	59 / 60	minus	None
MLOC	MLOC_51331.4	3041	7e-23	2102 - 2161	98	59 / 60	minus	None
MLOC	MLOC_51331.2	3853	7e-23	2428 - 2487	98	59 / 60	minus	None
JLOC1	JLOC1_32786.1	3792	4e-23	1268 - 1327	98	59 / 60	plus
Harvest21	ABC42508	504	3e-25	442 - 501	100	60 / 60	plus
Harvest35	U35_44590	504	3e-25	442 - 501	100	60 / 60	plus

Contig Sequence (504 bp)

>U35_44590 504 Hv_44K_v2
GATAATCTGCGGAAATGTACAAAGTTGCGGAATCTGGACCTTGGATTTAATCATTTGCGA
TCTATATCATCCTTGAGCGAGGTTTTCAGTCGGATTGGTAAACTAGTACTTATAAATAAT
GCTTTAACTACTATACATGGGATTGAAAATCTCAAGTCGCTTGTGGGCCTTGATCTGTCT
TACAACATCATATCAAACTTCTCAGAGTTGGAAATTCTTGGCAGCTTGTCTTTGCTACAG
AACCTATGGTTGGAAGGCAACCCAATCTGCTGTGCTCGTTGGTATCGAGCACGTGTTTTT
AGTTTTTTCCATAATTCAGAAAATCTAAAGTTAGATGATAAAGGTATGAACACACAAGAA
TACTGGGAAAAGCAAGTATTGTTTGGAAGCATGCAAAAACAACCTGCTGGCTATGGATTT
TATTTTCCTGCAAAAGATGATCATGAGGATGAATACACTTCAAATTCTATGATGAACAAG
ATTTCCCGACTTGCCTGTATTCTG

Homology of Contig U35_44590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12160.2	964	5e-81	protein\|leucine-rich repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g69590.1	1116	7e-83
Arabidopsis v10	AT1G48540.1	1063	5e-54	Outer arm dynein light chain 1 protein \| chr1:17945540-17950405 FORWARD LENGTH=1063