barSeed - Barley Seed Development Database

Probe CUST_1731_PI390587928

Source Contig U35_29989

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1731_PI390587928	Hv_44K_v2	TTGGTGAAACCTGAAGACAAGAAGATAATTGAAGGATCCTTCTCTGAGAAAGCTAACCAG	542	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54143.1	2085	2e-24	675 - 734	100	60 / 60	plus	ABC30472
JLOC1	JLOC1_34840.8	2138	8e-25	716 - 775	100	60 / 60	plus
JLOC1	JLOC1_34840.6	3495	8e-25	2073 - 2132	100	60 / 60	plus
JLOC1	JLOC1_34840.5	4229	8e-25	2807 - 2866	100	60 / 60	plus
Harvest21	ABC29605	605	3e-25	543 - 602	100	60 / 60	plus
Harvest35	U35_29989	605	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_29989 605 Hv_44K_v2
CCATTTCCCCCTTCGCCTCGCTCAAACCGCCAACAGCATCGACTCGGCGGCGGGGCGGCG
GCGGGGAAGCAGGCGGAGGCAGCGCCGGAGAGGGCACGCAATGCCGCCTAAGTCCGACAG
CGTGGAAGGAATCGTCCTCAACTTCGTCAACGAGCAAAATAGGCCATTGAATTCTCAGAA
TGTAGCTGATGCACTACAGAAGTTTAGTCTTAAGAAGACTGCAGTGCAAAAAGGACTGGA
TGCATTGGCTGACAGTGGCCAAATATCTTTCAAGGAGTATGGTAAGCAGAAAATCTATCT
GGCTCGGCAAGACCAGTTCGACATTCCAAACGGTGAAGAACTTGAGGAGATGAAGAAAGC
AAATAGCAAGCTACAGGAAGAACTCGCAGAACAAAAGAAAATNTACTAGTGAGGTCGAAT
CTGAGATAAAAGGTCTACAGTCAAACTTGACACTGGAAGAGATTAAGTCAAAGGAGGCCA
GATTACAAAGTGAGGTCCAGGAAATGGAAGAAAAATTGAGTAAATTGCAGAGTGGTATGA
TCTTGGTGAAACCTGAAGACAAGAAGATAATTGAAGGATCCTTCTCTGAGAAAGCTAACC
AGTGG

Homology of Contig U35_29989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50220.1	228	2e-58	protein\|homologous-pairing protein meu13, putative, expressed
Brachypodium v1_2	Bradi1g11260.1	228	9e-60
Arabidopsis v10	None